hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm11170/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0015 ( 313 res) mpm11170 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PP2C Protein phosphatase 2C 310.7 1.7e-89 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PP2C 1/1 13 264 .. 1 305 [] 310.7 1.7e-89 Alignments of top-scoring domains: PP2C: domain 1 of 1, from 13 to 264: score 310.7, E = 1.7e-89 *->ldvgvsrmqgwrksmeDahialknlnsss..sgkdswsffavfDGhg + v+++++++ r++meD+h++l+ +n ++ s+ ++++favfDGhg mKIAA0015 13 WLVSIHAIRNTRRKMEDRHVSLPAFNHLFglSDSVHRAYFAVFDGHG 59 GsqaakyagkhlhktilaerksfpegdpwEmklsdledalkesfleadtd G +aa+ya+ h+h t + ++++++ + +alke+f+ td mKIAA0015 60 GVDAARYASVHVH-TNASHQPELRTN---------PAAALKEAFRL--TD 97 eelrsaeassankvltkedlssGsTAvvalirgnkklLyVANvGDSRavL e++++ ++++ e l sG+T v+ali g L+VA++GDS+++L mKIAA0015 98 EMFLQ---KAKR-----ERLQSGTTGVCALIAGAA--LHVAWLGDSQVIL 137 crngnaikwavtLteDHkPsnedEreRIeaaGGfvsrvsgngRvnGvfLa ++g+++ L+e HkP++ dE++RIea+GGfvs ++ ++RvnG+ La mKIAA0015 138 VQQGRVV----KLMEPHKPERQDEKARIEALGGFVSLMD-CWRVNGT-LA 181 vSRAfGDfelKpgsklgpeesleanyeyikspeqlVtaePdvtsstdltp vSRA+GD+++Kp +V+ e d s++lt mKIAA0015 182 VSRAIGDVFQKP----------------------YVSGEADAA-SRELTG 208 dkDeFliLAcDGLWDvvsdqevvdivrselsdgnrsagdpmeaaeklvde + +++l+LAcDG++Dvv++ ev ++v+ +l + g m++ae+lv mKIAA0015 209 S-EDYLLLACDGFFDVVPHHEVTGLVHGHLLRHK---GNGMRIAEELVAV 254 aiargseDni<-* a++rgs+Dni mKIAA0015 255 ARDRGSHDNI 264 //