hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh04335/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0014  ( 453 res)   msh04335

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             24.4     0.0027   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/5     181   198 ..     1    25 []     4.7  3.3e+02
LRR_1      2/5     245   268 ..     1    25 []     5.7  2.2e+02
LRR_1      3/5     297   320 ..     1    25 []    14.3        3
LRR_1      4/5     326   347 ..     1    25 []     4.6  3.4e+02
LRR_1      5/5     354   371 ..     1    25 []     7.2  1.3e+02

Alignments of top-scoring domains:
LRR_1: domain 1 of 5, from 181 to 198: score 4.7, E = 3.3e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       L+ +dL+  N +l       l+gl+   
   mKIAA0014   181    CLRRIDLRF-N-NLG------LrGLS    198  

LRR_1: domain 2 of 5, from 245 to 268: score 5.7, E = 2.2e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       L+eL++++ +  lsg l   l+ l+   
   mKIAA0014   245    CLRELSMGS-S-LLSGRLDQLLsTLQ    268  

LRR_1: domain 3 of 5, from 297 to 320: score 14.3, E = 3
                   *->nLeeLdLsgCNpslsgs.lppsl.glp<-*
                      +L++LdLsg N  lsg  l p ++gl    
   mKIAA0014   297    HLKKLDLSG-N-DLSGNqLTP-FqGLL    320  

LRR_1: domain 4 of 5, from 326 to 347: score 4.6, E = 3.4e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L +L+L  C  +l  + +  l  lp   
   mKIAA0014   326    TLLHLELTEC--QLA-DAQL-LaTLP    347  

LRR_1: domain 5 of 5, from 354 to 371: score 7.2, E = 1.3e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L++L L g N +ls        gl+   
   mKIAA0014   354    SLRYLGLYG-N-PLS------MaGLK    371  

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