hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00884/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0013  ( 1049 res)   mpf00884

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   172.8    3.5e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1     125   298 ..     1   193 []   172.8  3.5e-47

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 125 to 298: score 172.8, E = 3.5e-47
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsgedd
                      ++iP++++ +++ l++  ++teG++R+sGs+ r+k+L++++d+ge  
   mKIAA0013   125    GHIPSFLVDACASLKE-HIHTEGLFRKSGSVVRLKALKSKLDQGEA- 169  

                   ldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefiea
                                +l+++ + dvAglLK+++ReLPeP+l+ +l+e + +a
   mKIAA0013   170 -------------CLSSALPCDVAGLLKQFFRELPEPVLPADLHEALFKA 206  

                   aklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HLn
                    +                  eer +a ++l +l   +  + Lry +++L+
   mKIAA0013   207 QQ---------------LGAEERNKATLLLSCLMANPTVDILRYFFnFLK 241  

                   rVaehsevNkMtarNLAivFgPtLlrpp..........ltdikhqnkvve
                    V+  +++NkM+++NLA++F+P+Ll+ ++++++ + ++++  ++q++vv+
   mKIAA0013   242 SVSLRASENKMDSSNLAVIFAPNLLQTSeghekmsantEKKLRLQAAVVQ 291  

                   tlienad<-*
                   t+i+ a    
   mKIAA0013   292 TFIDCAS    298  

//