hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00884/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0013  ( 1049 res)   mpf00884

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  167.1      3e-46   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1     128   274 ..     1   155 []   167.1    3e-46

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 128 to 274: score 167.1, E = 3e-46
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P ++++ ++ l+++ ++tEG++R+sGs+ r+k+L+ ++d+ge+    
   mKIAA0013   128    PSFLVDACASLKEH-IHTEGLFRKSGSVVRLKALKSKLDQGEA---- 169  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   +l+   + +vA+lLK+F+ReLPeP+l+ +l+e++++ a+++  ee   +a
   mKIAA0013   170 CLSSALPCDVAGLLKQFFRELPEPVLPADLHEALFK-AQQLGAEERN-KA 217  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr
                     +l +++  +  d Lry + +L+ V+ ++++NkM+++NLA++F+P+Ll+
   mKIAA0013   218 TLLLSCLMANPTVDILRYFFNFLKSVSLRASENKMDSSNLAVIFAPNLLQ 267  

                   ppdgdsad<-*
                   +++g +     
   mKIAA0013   268 TSEG-HEK    274  

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