hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05085/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0011  ( 918 res)   mpm05085

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    70.9    1.5e-16   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     463   519 ..     1    46 []    10.4       11
WD40       2/4     541   591 ..     1    46 []    14.2      2.7
WD40       3/4     609   649 ..     1    46 []    35.8  5.7e-06
WD40       4/4     832   872 ..     1    46 []    10.9      9.3

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 463 to 519: score 10.4, E = 11
                   *->t.kllrtlkgHtgespVtsvafspdggss...........dspnlla
                          ++ + + +g   +++++f+p+g  +++++ ++ +  +   lla
   mKIAA0011   463    RaHFVYGIACDSG--CIWDLKFCPSGAWEhpetlrkapllPRLGLLA 507  

                   sgs.DgtirlWd<-*
                    +++Dg++ l++   
   mKIAA0011   508 LACsDGKVLLFS    519  

WD40: domain 2 of 4, from 541 to 591: score 14.2, E = 2.7
                   *->t.kllrtlk.........gHtgespVtsvafspdggssdspnllasg
                      + ++l+tl+ ++ + +++   g   ++s+a+ p+     + ++la+g
   mKIAA0011   541    KvQCLATLQvgsvqasdpSECG--QCLSLAWMPTR----PHHHLAAG 581  

                   s.DgtirlWd<-*
                     +g + +W+   
   mKIAA0011   582 YyNGMVVFWN    591  

WD40: domain 3 of 4, from 609 to 649: score 35.8, E = 5.7e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  + + + +H++  +V++++++  +     +++l+s+++D++i++W
   mKIAA0011   609    KlYPFQCFLAHDQ--AVRTIQWCKAN-----SHFLVSAGsDRKIKFW 648  

                   d<-*
                   d   
   mKIAA0011   649 D    649  

WD40: domain 4 of 4, from 832 to 872: score 10.9, E = 9.3
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ +l  l+      +++ v+fsp+    ds  +l+sg++ g +r+ 
   mKIAA0011   832    SqLCLDRLQ--LE--AIHKVRFSPNL---DSYGWLVSGGqSGLVRIH 871  

                   d<-*
                       
   mKIAA0011   872 F    872  

//