hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05085/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0011  ( 918 res)   mpm05085

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        55.0    1.6e-12   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     465   519 ..     1    38 []     6.3       33
WD40       2/4     552   591 ..     1    38 []     9.8       13
WD40       3/4     611   649 ..     1    38 []    34.9  1.8e-06
WD40       4/4     834   872 ..     1    38 []     5.6       42

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 465 to 519: score 6.3, E = 33
                   *->eclavl.gHtspVtcvafspd................sgpllasgSr
                        ++ +   ++ +++++f+p+++ + +++  +++  +   lla +++
   mKIAA0011   465    HFVYGIaCDSGCIWDLKFCPSgawehpetlrkapllpRLGLLALACS 511  

                   DgtikiWd<-*
                   Dg++ +++   
   mKIAA0011   512 DGKVLLFS    519  

WD40: domain 2 of 4, from 552 to 591: score 9.8, E = 13
                   *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-*
                       ++a+ +   + + ++a+ p  + ++la g  +g +  W+   
   mKIAA0011   552    SVQASDpSECGQCLSLAWMPTrPHHHLAAGYYNGMVVFWN    591  

WD40: domain 3 of 4, from 611 to 649: score 34.9, E = 1.8e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + + + +H  +V+ + ++  ++++l+s+++D++ik Wd   
   mKIAA0011   611    YPFQCFlAHDQAVRTIQWCKANSHFLVSAGSDRKIKFWD    649  

WD40: domain 4 of 4, from 834 to 872: score 5.6, E = 42
                   *->eclavl.gHtspVtcvafspd..sgpllasgSrDgtikiWd<-*
                       cl  l+    ++  v+fsp+ +s+ +l+sg+  g ++i     
   mKIAA0011   834    LCLDRLqLE--AIHKVRFSPNldSYGWLVSGGQSGLVRIHF    872  

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