hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg01752/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0010 ( 1086 res) mbg01752 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HECTc Domain Homologous to E6-AP Carboxyl Terminus 605.2 2.3e-177 1 IQ Short calmodulin-binding motif containing co 26.3 0.0043 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IQ 1/1 47 69 .. 1 23 [] 26.3 0.0043 HECTc 1/1 745 1086 .] 1 407 [] 605.2 2.3e-177 Alignments of top-scoring domains: IQ: domain 1 of 1, from 47 to 69: score 26.3, E = 0.0043 *->rleraAiiIQaawRGylaRkryk<-* r+ ++A+iIQ+++RGy+ Rk+ mKIAA0010 47 RRLKNAVIIQSFIRGYRDRKQQY 69 HECTc: domain 1 of 1, from 745 to 1086: score 605.2, E = 2.3e-177 *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske +++ dLkkr +++++ +n+hg +E+g+DgGG++rEF+++l+k+ mKIAA0010 745 PENEPDLKKR----IRVHL-LNAHGLDEAGIDGGGIFREFLNELLKS 786 lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav +fnp ++g+F+++++ lL+pnP+a+++ ++++a+ mKIAA0010 787 GFNP-NQGFFKTTNEG---------------LLYPNPAAQMLVGDSFAR- 819 yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP +++f+Gr+lGkAlyen+l++l+Fa +F++kLLg++ +dv+ h+l+slDP mKIAA0010 820 HYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTS--ADVDIHHLASLDP 867 elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles e+y++L +L ++++++ +el L+F +v+++ mKIAA0010 868 EVYRNLLFL-------------------KSYEEDVEELG--LNF-TVVNN 895 dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG d+ge++vvELk GG++ipVT +N++ Y+hlv++yrlnk+++ ++ AFr+G mKIAA0010 896 DLGEAQVVELKFGGKDIPVTGANRIAYIHLVADYRLNKQIRPHCLAFRQG 945 FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq + +V+++e+Lr +Fd++E++ Li+G +++++++dLks+T+y ggY+++++ mKIAA0010 946 LANVVSLEWLR-MFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHP 994 tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq +i k FW+vve Ft+ee+rkLL+FVT++sr+P + GF++L+p mKIAA0010 995 VI---KIFWRVVEGFTDEEKRKLLKFVTSCSRPP--LLGFKELYP----- 1034 kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg F+I++ gs d +rLPtA+TC+N+LkLP+++ Lr+KLL+AI++ mKIAA0010 1035 AFCIHNGGS----DLERLPTASTCMNLLKLPEFYDEALLRSKLLYAIEC- 1079 RiggeGFgls<-* ++GF+ls mKIAA0010 1080 ---AAGFELS 1086 //