hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01047/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0008  ( 773 res)   mph01047

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GKAP     Guanylate-kinase-associated protein (GKAP) p  -134.8      1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GKAP       1/1     317   590 ..     1   365 []  -134.8    1e-05

Alignments of top-scoring domains:
GKAP: domain 1 of 1, from 317 to 590: score -134.8, E = 1e-05
                   *->Edrskavkkkkl.sSIGi...QVddieesdkkeEsksaskFqSiGVQ
                      E +s a k    ++  G ++ QV     s     ++sa  F      
   mKIAA0008   317    ERKSFAPKHCVFqPPCGLksyQVA--PLS-----PRSANAFLT---- 352  

                   VEedkRsarFkRSnSvtaavqADldleDaadsslkstEDksLqpgrtarr
                      d+   r+      ++  q D   e +    l+s  D+s       ++
   mKIAA0008   353 PNCDWNQLRP---EVFSTTTQ-DKANEILVQQGLESLTDRSK-EHVLNQK 397  

                   qsseadaGPRAstvsvfktaqikralAydddyDldYEPPAldaSslPPPd
                    +s  d                  + A   + +        ++S +    
   mKIAA0008   398 GASTSDS-----------------NHASVKGVPCS------EGSEG---- 420  

                   PAPGPGSGRRDSWmesssespaeaaqrSaCrRDGeWFLKLLqAEverLEG
                                            q+S  + D   F K+Lq E++rL  
   mKIAA0008   421 -------------------------QTSQPPHDVPYFRKILQSETDRLTS 445  

                   WCkQMerEak.ennLpEeiLgKirsAVGSAQLLmSQKfqQFreLCeqnLn
                    C   e E k + + + e  g ir+ VG + LL+   f QF +L +    
   mKIAA0008   446 HC--LEWEGKlDLDISDEAKGLIRTTVGQTRLLIKERFRQFEGLVDNCEY 493  

                   PdAfPrPTaQDLAGFWDLLQLSIEdismKFdELyqLKANsWklletPlKd
                          T  DL GFWD+    + d+  KF  L +L A  Wk    P K+
   mKIAA0008   494 KRGEKETTCTDLDGFWDMVSFQVDDVNQKFNNLIKLEASGWKDSNNPSKK 543  

                   KeEkkaPPPVPKKPAkgkAalvrerSldavdkQRQEARKRLLAAKRAASv
                      kk    VP   +k k         d     R  AR RL A K A   
   mKIAA0008   544 VLRKKI---VPGRTSKAK--------QD--EDGRAAARSRLAAIKNAMKG 580  

                   RqnSATESAdSIEIYiPEAQTRL<-*
                   R                E Q      
   mKIAA0008   581 RPQQ-------------EVQAHA    590  

//