hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph00745/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0007  ( 665 res)   mph00745

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    76.1    4.2e-18   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4      33    98 ..     1    46 []     0.6  3.9e+02
WD40       2/4     101   142 ..     1    46 []    37.9  1.3e-06
WD40       3/4     145   182 ..     1    46 []    30.6  0.00021
WD40       4/4     185   237 ..     1    46 []    10.8      9.5

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 33 to 98: score 0.6, E = 3.9e+02
                   *->t.kllrtlk..gHtgespVtsvafspdggss................
                      +++l +++ +++H + + +t++a+ p     ++++++++++++ +++
   mKIAA0007    33    NnRLHQEYVpsAHLS-GTCTCLAWAPARLQAkeshqrkkrksevtgt 78   

                   .dspnllasgs.DgtirlWd<-*
                   +d+ +lla g   g+i l++   
   mKIAA0007    79 kDQADLLALGTaVGSILLYS    98   

WD40: domain 2 of 4, from 101 to 142: score 37.9, E = 1.3e-06
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                       ++l ++l+++gH++  +V+++++++d+      ++l+s+s+D+ i 
   mKIAA0007   101    RgELHSKLTsgGHEN--RVNCIQWHQDN------DCLYSCSdDKYIV 139  

                   lWd<-*
                    W+   
   mKIAA0007   140 EWS    142  

WD40: domain 3 of 4, from 145 to 182: score 30.6, E = 0.00021
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                      t k+ +++kg ++  +V+s+++spdg      ++l+s++ +ti+lW 
   mKIAA0007   145    TcKVKCKWKGDNS--SVSSLCISPDG------KMLLSAG-RTIKLWV 182  

                   <-*
                      
   mKIAA0007     -     -    

WD40: domain 4 of 4, from 185 to 237: score 10.8, E = 9.5
                   *->t.kllrtlkgHtgespVtsvafspdggss......dspnllasgs..
                      t+++ r ++gH    pV+s++f     ++++++++  + +++sg  +
   mKIAA0007   185    TkEVYRHFTGHAT--PVSSLRFTTIRPNEsqpsdgITGLYFLSGAvh 229  

                   DgtirlWd<-*
                   D+ + +W    
   mKIAA0007   230 DRLLNVWQ    237  

//