hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00745/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0007  ( 665 res)   mph00745

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
NUC189   NUC189 domain                                  138.3    1.4e-37   1
WD40     WD domain, G-beta repeat                        69.4    7.3e-17   3
Mak16    Mak16 protein                                 -166.1       0.12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3     105   142 ..     1    38 []    37.2  3.6e-07
WD40       2/3     147   182 ..     1    38 []    25.1   0.0016
WD40       3/3     187   237 ..     1    38 []    11.2      8.5
NUC189     1/1     476   562 ..     1    88 []   138.3  1.4e-37
Mak16      1/1     462   637 ..     1   299 []  -166.1     0.12

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 105 to 142: score 37.2, E = 3.6e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        + + +gH++ V+c+ +++d   +l s+S+D+ i  W+   
   mKIAA0007   105    HSKLTSgGHENRVNCIQWHQD-NDCLYSCSDDKYIVEWS    142  

WD40: domain 2 of 3, from 147 to 182: score 25.1, E = 0.0016
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++   +g +s+V+++++spd g++l+s++r  tik+W    
   mKIAA0007   147    KVKCKWkGDNSSVSSLCISPD-GKMLLSAGR--TIKLWV    182  

WD40: domain 3 of 3, from 187 to 237: score 11.2, E = 8.5
                   *->eclavl.gHtspVtcvafspd............sgpllasgSrDgti
                      e+ ++++gH  pV++++f    ++++ ++++ ++  +l  + +D+ +
   mKIAA0007   187    EVYRHFtGHATPVSSLRFTTIrpnesqpsdgitGLYFLSGAVHDRLL 233  

                   kiWd<-*
                    +W    
   mKIAA0007   234 NVWQ    237  

NUC189: domain 1 of 1, from 476 to 562: score 138.3, E = 1.4e-37
                   *->IqsTVarLppalavpLLerLaerLqrrpararqllpWikavLiiHgs
                      I+ TV r+p   ++pLL +L++rLq++p +a +++ W+k+vL+iH+s
   mKIAA0007   476    IKRTVLRIPLRVVIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHAS 522  

                   YLvSqPknLlkkLgsLhqilesRvstLprLlaLsGrLdllv<-*
                   YL+++P +L+++Lg+L+q++esRv+t+++L+ L+G+L llv   
   mKIAA0007   523 YLSTLP-DLVEQLGTLYQLMESRVKTFQKLSNLHGKLILLV    562  

Mak16: domain 1 of 1, from 462 to 637: score -166.1, E = 0.12
                   *->qsDdViWqiIGnksFCSFKiKtdetqnFCRNEYNVTGLCNRqSCPLA
                             +i+ nk     ++ t+          NV+           
   mKIAA0007   462    -------EIL-NK-----VLQTK----------NVN----------- 474  

                   NSqYATireekGkiYLYmK.tiERAHfPsKLWERiKLSkNYeKALeQIde
                                    +K+t+ R+++      R+  ++     L+   +
   mKIAA0007   475 ----------------LIKrTVLRIPL------RVVIPL-----LQELTK 497  

                   hLlYWpk...ylHihKCKQRltRitQyliRmRkLaLrrqRLGekhlvPti
                   +L+  p++  ++ i   K  lt    yl +        + L e+ l + +
   mKIAA0007   498 RLQGHPNsaaLM-IQWLKCVLTIHASYLSTL------PD-LVEQ-LGT-L 537  

                   krKverREkrREeKALvAAkLekaIEkELLeRLkqGtYGdlpYNfsesKK
                     + e R k+ ++  L                  +   G+l++ + +   
   mKIAA0007   538 YQLMESRVKTFQK--L------------------SNLHGKLILLVTQV-- 565  

                   KmKNKDSELTKIFDVmGENKDEmKKKGKKGKDENVNYETmSQEafkKaLe
                                    E    m   G K K            + + +  
   mKIAA0007   566 --------------TASEKSKKMTSPGQKAKL-----------VYEEESS 590  

                   aeeveenDEdEeEdeDDEDEDVDmDDEeEEeDegEiEyVsDddEdEdvde
                    e  e++DE+ e d+D      D  DE+E+ D +++E V+ d E Ed+ +
   mKIAA0007   591 EE--ESDDEVPEKDSD------DNWDEDEDKDSEKDEGVDEDNEEEDE-D 631  

                   leDlEd<-*
                   +eD E+   
   mKIAA0007   632 MEDKEE    637  

//