hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/meg/meg01347/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0005  ( 424 res)   meg01347

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
W2       eIF4-gamma/eIF5/eIF2-epsilon                   127.5    2.4e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
W2         1/1     340   420 ..     1    87 []   127.5  2.4e-34

Alignments of top-scoring domains:
W2: domain 1 of 1, from 340 to 420: score 127.5, E = 2.4e-34
                   *->eeeqidlLlaiEefcvkleeelvikllakiLkslYDaDileEeaIlk
                       +++++lLl+i+e+c+++  ++ +k+++ki++++Y+a++l+Ee+Ilk
   mKIAA0005   340    GQSELTLLLKIQEYCYDN-IHF-MKAFQKIVVLFYKAEVLSEEPILK 384  

                   WyekadsadeskEgkskvrkqakkFitWLkeAeEEEseee<-*
                   Wy++a++a++    ks++++q+kkF++WLk+AeEE+++e    
   mKIAA0005   385 WYKDAHVAKG----KSVFLEQMKKFVEWLKNAEEESESEA    420  

//