hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh01094/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0003  ( 521 res)   msh01094

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FBG      Fibrinogen-related domains (FReDs)             454.1   7.1e-132   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FBG        1/1     304   519 ..     1   262 []   454.1 7.1e-132

Alignments of top-scoring domains:
FBG: domain 1 of 1, from 304 to 519: score 454.1, E = 7.1e-132
                   *->klprDCsdvlqknnGgktSGlYtIypdgsrsrplkVyCDMeTdGGGW
                      k +rDC+dv+q   G ++SG+YtIy++++ ++p kV+C M+++GGGW
   mKIAA0003   304    KPFRDCADVYQA--GFNKSGIYTIYFNNM-PEPKKVFCNMDVNGGGW 347  

                   TViQrRmDGsvdFyRgWkdYkeGFGnldgkgtGKiCviGEFWLGNeniHl
                   TViQ+R+DGs+dF+RgWk+Yk+GFGn++          GE+WLGNe+i++
   mKIAA0003   348 TVIQHREDGSLDFQRGWKEYKMGFGNPS----------GEYWLGNEFIFA 387  

                   LTsqgktpyeLRvDLeDwegntayAkYdrFkvadwvefdkeadgYrLhig
                   +Tsq++  y+LR++L+Dwegn+ay++YdrF++++      e+++YrL++ 
   mKIAA0003   388 ITSQRQ--YMLRIELMDWEGNRAYSQYDRFHIGN------EKQNYRLYLK 429  

                   gYsGtAGDaLvfGadqeksltyHngmqFSTyDrDNDkyetnnPtkCAeey
                   g++GtAG++         s+ + +g++FST+D DND+++++    CA++ 
   mKIAA0003   430 GHTGTAGKQ---------SSLILHGADFSTKDADNDNCMCK----CALML 466  

                   gGGWWYnsChaaNLNGrYYpgGeYdktkvdygydnGInWatwkGsatGdv
                   +GGWW+++C+++NLNG++Y+ G+      ++g++nGI+W+++kG      
   mKIAA0003   467 TGGWWFDACGPSNLNGMFYTAGQ------NHGKLNGIKWHYFKGP----- 505  

                   ywySlkfteMKiRPl<-*
                     ySl++t+M+iRPl   
   mKIAA0003   506 -SYSLRSTTMMIRPL    519  

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