hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh01094/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0003  ( 521 res)   msh01094

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Fibrinogen_C Fibrinogen beta and gamma chains, C-term   264.9    1.1e-75   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Fibrinogen_C   1/1     305   519 ..     1   272 []   264.9  1.1e-75

Alignments of top-scoring domains:
Fibrinogen_C: domain 1 of 1, from 305 to 519: score 264.9, E = 1.1e-75
                   *->spkDCsdilqkRPGgktSPPsGlYtIqPdgakekpleVYCDMeTdGG
                        +DC d++q   G   S   G YtI+ +     p +V+C M+  GG
   mKIAA0003   305    PFRDCADVYQA--GFNKS---GIYTIYFNNMP-EPKKVFCNMDVNGG 345  

                   GWTVfQrRqDGslnFyRnWkdYkeGFGnlstsgtGkkYCglpgEFWLGNd
                   GWTV+Q R+DGsl+F R Wk+Yk GFGn+s            gE+WLGN+
   mKIAA0003   346 GWTVIQHREDGSLDFQRGWKEYKMGFGNPS------------GEYWLGNE 383  

                   kihlLTkqgsipyeLRveLeDwnGetvyAlYdkFtVgdeankYrLsvsgY
                    i  +T+q   +y LR+eL Dw G+ +y +Yd F++g+e+  YrL + g 
   mKIAA0003   384 FIFAITSQR--QYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGH 431  

                   sGGtAGnALveGasqlvtagd..smtyHNGmfFSTyDrDNDgWsTtspsg
                    G               tag+++s+  H G  FST D DND         
   mKIAA0003   432 TG---------------TAGKqsSLILH-GADFSTKDADND-----NCMC 460  

                   nCAesyggGRGaWWynsChaANLNGrYYyGgtyspqEmaphGtDnGvvWa
                    CA+   gG   WW+++C  +NLNG  Y  g+++          nG+ W 
   mKIAA0003   461 KCALMLTGG---WWFDACGPSNLNGMFYTAGQNHGK-------LNGIKWH 500  

                   tWkGsnqAqPGGYwySmkfaeMKiRPr<-*
                   ++kG          yS++ ++M+iRP+   
   mKIAA0003   501 YFKGP--------SYSLRSTTMMIRPL    519  

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