hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03039/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0002  ( 555 res)   mpj03039

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Cpn60_TCP1 TCP-1/cpn60 chaperonin family                614.6   5.9e-181   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Cpn60_TCP1   1/1      46   536 ..     1   537 []   614.6 5.9e-181

Alignments of top-scoring domains:
Cpn60_TCP1: domain 1 of 1, from 46 to 536: score 614.6, E = 5.9e-181
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      la  ++t +GP+G+nKm++n    ++++TnD+aTIl+e+e+qhP   
   mKIAA0002    46    LAQTTRTAYGPNGMNKMVINRL-EKLFVTNDAATILRELEVQHP--- 88   

                   lgAkllveaskkQddevGDGTTtvvvLAgeLLkeaekLinaGlhPtqIir
                    +Ak++v+as +Q+ evGDGT++v+v+Ag+LL+ ae+L+  Gl ++++i+
   mKIAA0002    89 -AAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIS 137  

                   GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia
                   Gye A++ka e+L++l+  + +n + + +e+++ ++ts+ sK+++  +++
   mKIAA0002   138 GYEIACKKAHEILPELVCCSAKNLR-DVDEVSSLLRTSIMSKQYG-SETF 185  

                   dAlakvgvdavitveeekndkysfdldnievvkglGgsifdsglisGyvi
                     lak+ + a+++++++ ++   f++dni+v+k+lG+ i  s ++ G+v+
   mKIAA0002   186 --LAKLIAQACVSIFPDSGN---FNVDNIRVCKILGSGIYSSSVLHGMVF 230  

                   tkeerhpvelempkrlendaKIavlncpLeiLelktetkrplviiasded
                   +ke+++     +++ +++ aKIav++cp++    +tetk ++v+i+ +e+
   mKIAA0002   231 KKETEG-----DVTSVKD-AKIAVYSCPFD--GMITETK-GTVLIKTAEE 271  

                   leaLstlEenklkgkvkviavkkRvcdgpnvvitqkegidDiAlhtladt
                   l ++s++Een ++ +vk+ia +     g+nv++t +  + DiAlh+ +  
   mKIAA0002   272 LMNFSKGEENLMDAQVKAIAGT-----GANVIVTGG-KVADIALHYAN-- 313  

                   visdkagImalrrvskedlgrlakvlgakvvttligpgagsedeeeiGer
                       k++Im +r  sk dl+rl+k++ga+++++l  p      +ee+G++
   mKIAA0002   314 ----KYNIMLVRLNSKWDLRRLCKTVGATALPKLTPPV-----QEEMGHC 354  

                   devleqeigestsddkvtkleerkarLsgkvatIllRGateveldElerr
                   d+v+  e g+     +v++++  k    g + tI+lRG+t++  d++er+
   mKIAA0002   355 DSVYLSEVGD----TQVVVFKHEKE--DGAISTIVLRGSTDNLMDDIERA 398  

                   ieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlavea
                   ++D++n  k + +d+r+VPGGGa+Eielak++++y +++++g+eq+a+++
   mKIAA0002   399 VDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSY-GETCPGLEQYAIKK 447  

                   fakALeviPkiLAeNAGldgidviskLraehakGnsdlknyGydaatgki
                   fa+A+e+iP++LAeN+G+ +++viskL++ h +Gn   kn+G+d++ +  
   mKIAA0002   448 FAEAFEAIPRALAENSGVKANEVISKLYSVHQEGN---KNVGLDIEAEVP 494  

                   ..vdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                      dm+ea I+D +  k +a+klAt aA ++L++D+iImakp   
   mKIAA0002   495 avKDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKP    536  

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