hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj08249/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00416  ( 522 res)   msj08249

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    172.5    4.3e-47  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/11     51    73 ..     1    23 []    28.0   0.0013
ZnF_C2H2   2/11     79   101 ..     1    23 []    24.5    0.014
ZnF_C2H2   3/11    107   129 ..     1    23 []    23.4    0.031
ZnF_C2H2   4/11    135   158 ..     1    23 []    21.6     0.11
ZnF_C2H2   5/11    226   248 ..     1    23 []    11.7       15
ZnF_C2H2   6/11    254   276 ..     1    23 []    20.6     0.21
ZnF_C2H2   7/11    358   379 ..     1    23 []     8.9       31
ZnF_C2H2   8/11    385   408 ..     1    23 []    16.0        5
ZnF_C2H2   9/11    440   462 ..     1    23 []    24.1    0.019
ZnF_C2H2  10/11    468   490 ..     1    23 []    18.5     0.92
ZnF_C2H2  11/11    496   518 ..     1    23 []    27.0   0.0025

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 11, from 51 to 73: score 28.0, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgksf+ +++L+rH  +H   
   mFLJ00416    51    FHCSE-CGKSFRYRsDLRRHFARH    73   

ZnF_C2H2: domain 2 of 11, from 79 to 101: score 24.5, E = 0.014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp  Cgk f++  +L +H+r+H   
   mFLJ00416    79    HACPR-CGKGFKHSfNLANHLRSH    101  

ZnF_C2H2: domain 3 of 11, from 107 to 129: score 23.4, E = 0.031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  C+k f++ + L +H+ vH   
   mFLJ00416   107    YRCSA-CPKGFRDStGLLHHQVVH    129  

ZnF_C2H2: domain 4 of 11, from 135 to 158: score 21.6, E = 0.11
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C + C  +fss+++L rH++++H   
   mFLJ00416   135    YCCLV-CELRFSSRsSLGRHLKrRH    158  

ZnF_C2H2: domain 5 of 11, from 226 to 248: score 11.7, E = 15
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C   C ++f + ++L  H   H   
   mFLJ00416   226    FACGA-CARRFDHGrELAAHWAAH    248  

ZnF_C2H2: domain 6 of 11, from 254 to 276: score 20.6, E = 0.21
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kCp  C + f+ +  L+rH  +H   
   mFLJ00416   254    FKCPR-CERDFNAPaLLERHKLTH    276  

ZnF_C2H2: domain 7 of 11, from 358 to 379: score 8.9, E = 31
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C  +Cg  f s++aL  H+  H   
   mFLJ00416   358    YQC--DCGTFFASApALASHLEAH    379  

ZnF_C2H2: domain 8 of 11, from 385 to 408: score 16.0, E = 5
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C + Cg  +    aL++H r +H   
   mFLJ00416   385    YGCGH-CGALYAALaALEEHRRaSH    408  

ZnF_C2H2: domain 9 of 11, from 440 to 462: score 24.1, E = 0.019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C k f+s+++L+rH+ vH   
   mFLJ00416   440    FGCSE-CEKLFRSPrDLERHVLVH    462  

ZnF_C2H2: domain 10 of 11, from 468 to 490: score 18.5, E = 0.92
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgk f+++  LkrH   H   
   mFLJ00416   468    FPCLE-CGKFFRHEcYLKRHRLLH    490  

	[output cut off at A = 10 top alignments]
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