hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj08249/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00416  ( 522 res)   msj08249

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         206.6    3.8e-58  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/11     51    73 ..     1    24 []    29.3  9.2e-05
zf-C2H2    2/11     79   101 ..     1    24 []    30.8  3.1e-05
zf-C2H2    3/11    107   129 ..     1    24 []    24.4   0.0026
zf-C2H2    4/11    135   158 ..     1    24 []    20.8    0.032
zf-C2H2    5/11    226   248 ..     1    24 []    14.4      2.7
zf-C2H2    6/11    254   276 ..     1    24 []    25.9  0.00091
zf-C2H2    7/11    358   379 ..     1    24 []    15.4      1.4
zf-C2H2    8/11    385   408 ..     1    24 []    15.4      1.4
zf-C2H2    9/11    440   462 ..     1    24 []    25.0   0.0018
zf-C2H2   10/11    468   490 ..     1    24 []    22.4    0.011
zf-C2H2   11/11    496   518 ..     1    24 []    34.3  2.7e-06

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 11, from 51 to 73: score 29.3, E = 9.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +CgksF+ +s+L+rH  +H   
   mFLJ00416    51    FHCS-ECGKSFRYRSDLRRHFARH    73   

zf-C2H2: domain 2 of 11, from 79 to 101: score 30.8, E = 3.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + Cp  Cgk F+++ nL +Hlr+H   
   mFLJ00416    79    HACP-RCGKGFKHSFNLANHLRSH    101  

zf-C2H2: domain 3 of 11, from 107 to 129: score 24.4, E = 0.0026
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  C k F+++  L +H+ +H   
   mFLJ00416   107    YRCS-ACPKGFRDSTGLLHHQVVH    129  

zf-C2H2: domain 4 of 11, from 135 to 158: score 20.8, E = 0.032
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C  +C  +Fs++s+L rHl+++H   
   mFLJ00416   135    YCCL-VCELRFSSRSSLGRHLKRrH    158  

zf-C2H2: domain 5 of 11, from 226 to 248: score 14.4, E = 2.7
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C   C ++F +  +L +H+  H   
   mFLJ00416   226    FACG-ACARRFDHGRELAAHWAAH    248  

zf-C2H2: domain 6 of 11, from 254 to 276: score 25.9, E = 0.00091
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kCp  C + F+ ++ L+rH+ tH   
   mFLJ00416   254    FKCP-RCERDFNAPALLERHKLTH    276  

zf-C2H2: domain 7 of 11, from 358 to 379: score 15.4, E = 1.4
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cg+ F +   L +Hl  H   
   mFLJ00416   358    YQCD--CGTFFASAPALASHLEAH    379  

zf-C2H2: domain 8 of 11, from 385 to 408: score 15.4, E = 1.4
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C  +Cg  +   + L+ H+r +H   
   mFLJ00416   385    YGCG-HCGALYAALAALEEHRRAsH    408  

zf-C2H2: domain 9 of 11, from 440 to 462: score 25.0, E = 0.0018
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +C k F+++ +L+rH  +H   
   mFLJ00416   440    FGCS-ECEKLFRSPRDLERHVLVH    462  

zf-C2H2: domain 10 of 11, from 468 to 490: score 22.4, E = 0.011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C  +Cgk F++   LkrH+  H   
   mFLJ00416   468    FPCL-ECGKFFRHECYLKRHRLLH    490  

zf-C2H2: domain 11 of 11, from 496 to 518: score 34.3, E = 2.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +Cgk F + snL rHl+ H   
   mFLJ00416   496    FPCH-ICGKGFITLSNLSRHLKLH    518  

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