hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/msh/msh07154/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00415 ( 951 res) msh07154 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- cNMP Cyclic nucleotide-monophosphate binding doma 76.0 4.8e-18 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- cNMP 1/2 80 199 .. 1 123 [] 36.8 3e-06 cNMP 2/2 202 315 .. 1 123 [] 39.7 3.9e-07 Alignments of top-scoring domains: cNMP: domain 1 of 2, from 80 to 199: score 36.8, E = 3e-06 *->lfkaldaeelreladalepvrypaGevifrqGdpgdsfYiivsGeve l++ + ++ + l+ + ++paG+ + +qGd+ ++ ++vsG++ mFLJ00415 80 LLTLMKLDDPSLLDGRVAFLHVPAGTLVSKQGDQDVNILFVVSGMLH 126 vyktrlstledgreqilatlgpGdfFGElall.rrarsaaavalvelatl vy++ + ++ +++ l +pG+++G la+l+ + +++a+ +++ + mFLJ00415 127 VYQQ---KIDSLEDTCLFLTHPGEMVGQLAVLtGEPLMFTIRAN-RDCSF 172 lridferflqllpenpqlllelllell<-* l i++ +f+++++++p+ l ++ + + mFLJ00415 173 LSISKAHFYEIMRKRPDVVLGVAHTVV 199 cNMP: domain 2 of 2, from 202 to 315: score 39.7, E = 3.9e-07 *->lfkaldaeelreladalepvrypaGevifrqGdpgdsfYiivsGeve ++ r+++ al +++aG i+rqGd+ d Yi++sG+++ mFLJ00415 202 -----MSSFVRQIDFALDWMEVEAGRAIYRQGDKSDCTYIVLSGRLR 243 vyktrlstledgreqilatlgpGdfFGElall.rrarsaaavalvelatl + + +dg+ + +++g+Gd++G+ l+++ar++++ a+ ++++l mFLJ00415 244 SVIR----KDDGKKRLAGEYGRGDLVGVVETLtHQARATTVHAV-RDSEL 288 lridferflqllpenpqlllelllell<-* +++ + + +++pq +l+ l mFLJ00415 289 AKLPAGALTSIKRRYPQVVTRLIHLLG 315 //