hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh07154/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00415  ( 951 res)   msh07154

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Patatin      Patatin-like phospholipase                 185.2    1.1e-51   1
cNMP_binding Cyclic nucleotide-binding domain           145.6    8.5e-40   2

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
cNMP_binding   1/2      96   189 ..     1   100 []    67.0    4e-16
cNMP_binding   2/2     213   305 ..     1   100 []    78.7  1.2e-19
Patatin        1/1     549   715 ..     1   262 []   185.2  1.1e-51

Alignments of top-scoring domains:
cNMP_binding: domain 1 of 2, from 96 to 189: score 67.0, E = 4e-16
                   *->lelrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreq.ilgi
                      + ++++++G+ + ++Gd++  + +v+sG++ vy++  d  e + l++
   mFLJ00415    96    VAFLHVPAGTLVSKQGDQDVNILFVVSGMLHVYQqKIDSLEDtCLFL 142  

                   lgpGdffGelallggendspSrhaprsatvvAltdsellvipredflell
                    +pG+++G la+l+ge        p  +t++A  d+  l+i++++f e++
   mFLJ00415   143 THPGEMVGQLAVLTGE--------PLMFTIRANRDCSFLSISKAHFYEIM 184  

                   eedpe<-*
                   ++ p+   
   mFLJ00415   185 RKRPD    189  

cNMP_binding: domain 2 of 2, from 213 to 305: score 78.7, E = 1.2e-19
                   *->lelrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgil
                      l + ++++G  i+r+Gd++d+ YivlsG+++ + + +dg+  + g++
   mFLJ00415   213    LDWMEVEAGRAIYRQGDKSDCTYIVLSGRLRSVIrKDDGKKRLAGEY 259  

                   gpGdffGelallggendspSrhaprsatvvAltdsellvipredflelle
                   g+Gd++G  + l+++         r+ tv A+ dsel+ +p+ ++ ++ +
   mFLJ00415   260 GRGDLVGVVETLTHQ--------ARATTVHAVRDSELAKLPAGALTSIKR 301  

                   edpe<-*
                   ++p+   
   mFLJ00415   302 RYPQ    305  

Patatin: domain 1 of 1, from 549 to 715: score 185.2, E = 1.1e-51
                   *->LvLdGGGarGiaWhiGvLkaLeeagielDGpdarlldyfDviaGTSa
                      LvL+GGGarG+a ++G+L+aL+e g+           ++D+i+GTS+
   mFLJ00415   549    LVLGGGGARGCA-QVGILRALAECGV-----------PVDIIGGTSI 583  

                   GaivaallaagldparplFaeeleefylevkpriFldssgksptela.ki
                   Ga+ +al+a +++       +++  +++ +++             ++++ 
   mFLJ00415   584 GAFMGALFAEERSY------SQTRIRAKQWAEG------------MTsMM 615  

                   lrlaltakllklrdltrpslglvlaglydgdrlekllkdllregrfgdlt
                            +  +dlt+p+     +++++g  +++++  ++      d++
   mFLJ00415   616 ---------KTILDLTYPI-----TSMFSGTGFNSSISNIF-----KDRQ 646  

                   ledlpkvrrresltfddfllyidrtgkplvipatmvtavdlstgepvifr
                   +edl+                      p+++++t     d++++ +++++
   mFLJ00415   647 IEDLWL---------------------PYFAITT-----DITASAMRVHT 670  

                   nyealnnstpsdgklwdAvrASsaaPgyFppvelktedkglepinidgfl
                              dg+lw++vrAS+++ gy+pp +++          +dg+l
   mFLJ00415   671 -----------DGSLWRYVRASMSLSGYMPPLCDP----------KDGHL 699  

                   lvDGGvvaNnPvllar<-*
                   l+DGG+++N+P+++ar   
   mFLJ00415   700 LMDGGYINNLPADVAR    715  

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