hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msh/msh04044/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00407 ( 1081 res) msh04044 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CH Calponin homology (CH) domain 85.7 9.2e-22 1 LIM LIM domain 13.0 0.0041 1 DAO FAD dependent oxidoreductase -51.1 0.14 1 FAD_binding_3 FAD binding domain -127.7 0.013 1 HI0933_like HI0933-like protein -279.3 0.84 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DAO 1/1 119 333 .. 1 402 [] -51.1 0.14 HI0933_like 1/1 118 427 .. 1 414 [] -279.3 0.84 FAD_binding_3 1/1 117 480 .. 1 384 [] -127.7 0.013 CH 1/1 542 644 .. 1 121 [] 85.7 9.2e-22 LIM 1/1 716 774 .. 1 62 [] 13.0 0.0041 Alignments of top-scoring domains: DAO: domain 1 of 1, from 119 to 333: score -51.1, E = 0.14 *->DVvVIGGGivGlstAyhLakrGlsVtllErgdigsGaSgrnaGllhp + +V+G+G Gl +A +La G++V+l+E++ i + S +n +l+p mFLJ00407 119 KCLVVGAGPCGLRAAVELALLGARVVLVEKR-IKF--SRHNVLHLWP 162 glryleqgrWllldlvreagkerallarlaesrdlwreleleelgidcdf + ++ +r+l + mFLJ00407 163 F------------------------------TIHDLRAL-------GAK- 174 rrtGglylardeeeldlerlaaalralGlpedvelLdaeelrelePgls. + g ++ ++ mFLJ00407 175 -KFYGRFCT--------------------------------------GTl 185 pglvgalfypddghvdParlvraLaraAealGveilegteVtgler...e + h+ ++l + L++ A lGvei+ g + tgl++++++ mFLJ00407 186 D------------HISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPpprK 223 gggrvvVeT.....edGe.irAfiAdkVVnAaGawsdelarllgl.l.pr g g ++++++++++++ +++ d+++ AaG+ g ++++ mFLJ00407 224 GSG-WRAQLqpnppAQLAsYEF---DVLISAAGGKFVP----EGFtIrE- 264 IvPYfLkplrdiplrPvrGqvlvteplpealapallppdeavgdsrgvyi ++ l ++ + + mFLJ00407 265 -------------------------------MRGKLAIGITAN------- 276 ipreGgvliGattdgrldfgggpeevsg.didvdlarleellerarrlfP gr + + ++e+sg + ++ ++++ ll++ mFLJ00407 277 -----------FVNGRTVEETQVPEISGvARIYNQKFFQSLLKAT----- 310 qLadadilrawaGlRpltpDglPiigtpDtskPviGrvpglpglyvatGh +++ + i++ ++ y++ mFLJ00407 311 GIDLENIVYYK-----------------------------DETHYFV--- 328 gghGltlapaiGkllAel<-* ++A mFLJ00407 329 -------------MTAKK 333 HI0933_like: domain 1 of 1, from 118 to 427: score -279.3, E = 0.84 *->ydViVIGGGAAGLMaAisAAakrGrrVlLidkgkklGrKiliSGGGR ++ +V+G+G+ GL aA ++ a G+rV L +k mFLJ00407 118 TKCLVVGAGPCGLRAAVEL-ALLGARVVLVEKR-------------- 149 CNvTNlsvepdnflsryPgNphFlkSALsrFtpwDfIafveelGvalkee ++++ n l + L Ft +D++a+ ++ + mFLJ00407 150 -----IKFSRHNVL-H-----------LWPFTIHDLRALGAK-------K 175 dhGRlFPdsdkAkdIvd...mLlnelkelGVkirlrteVlsv....ekdd GR + + +I + + Ll+ + lGV+i+ + + ++ ++++ k mFLJ00407 176 FYGRFCTGTLDHISIRQlqlLLLKVALLLGVEIHWGVKFTGLqpppRKGS 225 dgrfrvktpk...sgeeleadslViAtGGlSiPktGStGfGYqlAeqfGh + r +++ +++ + ++e d l+ A GG+ +P G+ + e +G mFLJ00407 226 GWRAQLQP-NppaQLASYEFDVLISAAGGKFVPE------GFTIREMRGK 268 tIiplrPaLV.PftldepflflkaLsGisLknvvlsllnkkgkggisfrg i + + V++ t++e ++ ++sG++ ++ ++ k+ + mFLJ00407 269 LAIGITANFVnGRTVEETQV--PEISGVARIYNQKFFQSL-LKATGIDLE 315 dlLF....THrGlSGPAiLqlSsywrraLkk.kggetlsiDLlPdldaee +++ +++TH+ ++ ++ k+ l++ + mFLJ00407 316 NIVYykdeTHY------------FV----MTaKKQCLLRLGV-------- 341 laarLekqrgahpkkslkNaLaglLPkrlaeflleeagiqdpdkklaqls l++ L+++ + a++ P+ l f a+ + kl++l mFLJ00407 342 LRQDLSETDQLLG-------KANVVPEALQRFARAAADF-ATHGKLGKLE 383 kkelaaLadlLkawtfkpnGtegyrtAeVTaGGVdtkEisskTMESKkvP +++ a+ ++ a+ f+ ++ Ae++a + k +++ mFLJ00407 384 FAQDARGRPDVAAFDFT-----SMMRAESSA------RVQEKHG-ARLLL 421 GLFFaGEVLDVtGwTGGYNfQwAWaSGyaAGqg<-* GL G + mFLJ00407 422 GL---------------------------VGDC 427 FAD_binding_3: domain 1 of 1, from 117 to 480: score -127.7, E = 0.013 *->etdVLIVGgGPaGLmlAllLaraGvrvvvvErhaetsvlprIRAggl t+ L+VG+GP+GL +A +La+ G+rvv+vE++ ++s++ ++l mFLJ00407 117 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHN---VLHL 160 nqRTMElLrqaGledrilaegaphegmglffgatSlaGDElgrirtwgti + T+ + ++a ga++ ++++ +g mFLJ00407 161 WPFTI---------HDLRALGAKKFYGRFCTGTL---------------- 185 pdaradldFetlltsptrvtvypQnelEpiLrehAeelGsadirfgtevl +++ + Q l +L++ A lG ++i++g ++ mFLJ00407 186 ----DHIS-------------IRQLQL--LLLKVALLLG-VEIHWGVKFT 215 .................................................. + +++++++++ + + +++++ + + + + + +++ +++ + ++ mFLJ00407 216 glqppprkgsgwraqlqpnppaqlasyefdvlisaaggkfvpegftirem 265 ...........................................sfeqDgd +++ + + + ++++ ++++ ++ ++ + +++ ++ ++ D + mFLJ00407 266 rgklaigitanfvngrtveetqvpeisgvariynqkffqsllkATGIDLE 315 gVtAvvrdrrtgeeiEiytvrAr...YlVGcDGgrStVRkalGiefeGeg + +v++++++ + +A+++ l + + R++l + + mFLJ00407 316 N---IVYYKDETHY---FVMTAKkqcLL-----RLGVLRQDLSET----D 350 tiypagsldvlfdap.dlselvegrafvvylilnphsrGfglgiavvRmv + +g ++v+++a+++++ ra+ + + ++ mFLJ00407 351 QL--LGKANVVPEALqRFA-----RAAADFATHGKLGK----------LE 383 gPtrsgglerrvivvpfgekvedrpeevteeelkqalreatgidfllvei + + +g+++ + +++ +++ +++v e + +++l+ ++g+ +++ mFLJ00407 384 FAQDARGRPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEP-- 431 twksawgvasrvAdryRkGRVFLAGDAAHihPPtGGqGlNtgiQDAfNLa w++ + vA+ FLA Af+ a mFLJ00407 432 ----FWPLGTGVARG------FLA---------------------AFDAA 450 WKLAaVLrGtAgeeLLDtYeaERrpvaqavvdra<-* W +V r +A ++ + aER q + + + mFLJ00407 451 W---MVKR-WAEGAGPLEVLAERESLYQLLSQTS 480 CH: domain 1 of 1, from 542 to 644: score 85.7, E = 9.2e-22 *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL +ell W+++++ag +++ v++t+f+++w DGlaLcaL mFLJ00407 542 GTEELLHWCQEQTAG-FPG--------VHVTDFSSSWA-DGLALCAL 578 lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi +++l+Pgl++++ +l+ + +le + al +ae e lgi ++ ++++ + mFLJ00407 579 VHHLQPGLLEPS---ELQGMGALEATTWALRVAEHE-LGI-TPVLSAQAV 623 vegnpdPDeklvltllwqLirrfq<-* + g + ++ +++l+++ +f+ mFLJ00407 624 MAGSD---PLGLIAYLSHFHSAFK 644 LIM: domain 1 of 1, from 716 to 774: score 13.0, E = 0.0041 *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefyek.. C Cgk y e++ ++ ++ +H++CF+C++C+ +L +g+ + +++ mFLJ00407 716 CELCGKHLYILERF-CVDGHFFHRSCFCCHTCEATLWPGG-YGQHpg 760 dgskelYCkkDYyklfg<-* dg +YC + + + mFLJ00407 761 DG-H-FYCLQ-HLPQED 774 //