hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mlj/mlj03177/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00400  ( 603 res)   mlj03177

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TMC      TMC domain                                     247.1    2.4e-70   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TMC        1/1     303   413 ..     1   116 []   247.1  2.4e-70

Alignments of top-scoring domains:
TMC: domain 1 of 1, from 303 to 413: score 247.1, E = 2.4e-70
                   *->CWETfVGQElYKLvifDFlftllvtflveFlRrllvrylsskwlWDl
                      CWE++VG+ElYKL+if+Fl+t++++flv+++Rrllv+++s++ +   
   mFLJ00400   303    CWENSVGEELYKLIIFNFLLTVAFAFLVSLPRRLLVERFSGW-F--- 345  

                   EltflgrqEFdvarNVLeLIYgQTlvWiGiFFcPLLPaIntiKlfilFYi
                    +t+l+r+EF v++NVL+++++QT++W+G+F+cPLLP++n+++lf++FYi
   mFLJ00400   346 -WTWLDREEFLVPKNVLDIVAAQTVTWMGLFYCPLLPLLNSVFLFLTFYI 394  

                   KKisLltNcrPpsrpFRAS<-*
                   KK++Ll+N+r+++r+FRAS   
   mFLJ00400   395 KKYTLLRNSRASPRRFRAS    413  

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