hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj07104/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00395  ( 711 res)   msj07104

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MYSc     Myosin. Large ATPases.                         108.0    1.3e-34   1
SH3      Src homology 3 domains                          79.7    3.7e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MYSc       1/1       1   304 [.     1   771 []   108.0  1.3e-34
SH3        1/1     657   711 .]     1    58 []    79.7  3.7e-19

Alignments of top-scoring domains:
MYSc: domain 1 of 1, from 1 to 304: score 108.0, E = 1.3e-34
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                                                                     
   mFLJ00395     -    ----------------------------------------------- -    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                                                                     
   mFLJ00395     - -------------------------------------------------- -    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
   mFLJ00395     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                     
   mFLJ00395     - -------------------------------------------------- -    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                                                                     
   mFLJ00395     - -------------------------------------------------- -    

                   sgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILHLG
                                                                     
   mFLJ00395     - -------------------------------------------------- -    

                   NieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkRki
                                                                     
   mFLJ00395     - -------------------------------------------------- -    

                   ktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINkslsayf
                                                                     
   mFLJ00395     - -------------------------------------------------- -    

                   IGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQEEYerEGI
                         yGFEiF+kN+FEQfCIN++NEKLQQ+F+++++K EQEEY++EGI
   mFLJ00395     1 ------YGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGI 44   

                   eWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClf.HAqPkgTDqt
                    Wt+I++f  +N++++DLIE+K+  P+GI+s LD++C + HA++ g Dqt
   mFLJ00395    45 RWTPIEYF--NNKIVCDLIENKL-SPPGIMSVLDDVCATmHATGGGADQT 91   

                   FleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFiikHYAGdV
                   +l+KL+ a      ++h+hf +              ++++F+i+HYAG+V
   mFLJ00395    92 LLQKLQAA-----VGTHEHFNS--------------WSAGFVIHHYAGKV 122  

                   tYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqsssaakeks
                   +Y+v GF+e+N+D+Lf dlieL+qsS++++++ LFpe    +        
   mFLJ00395   123 SYDVSGFCERNRDVLFSDLIELMQSSDQDFLRMLFPEKLNID-------- 164  

                   sggagksrkagrrepskgtisskkrppTvGsqFk.sLneLmetLnstnPH
                                        +k+rp+T+Gs++k+++n+L++tL +++PH
   mFLJ00395   165 ---------------------KKGRPSTAGSKIKkQANDLVSTLKKCTPH 193  

                   FIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFPyRlpfdeF
                   +IRCIKPNe+K+p+++++s+V+hQ+ ylG+ EniR+RraGF+yR+ f++F
   mFLJ00395   194 YIRCIKPNETKRPRDWEESRVKHQVEYLGLRENIRVRRAGFAYRRQFSKF 243  

                   lqRYkvLlpktwppwggewknrlfgdakkacealLqslglgiegdnldee
                   lqRY +L p twp+w+        gd++++++ lL +++       ++++
   mFLJ00395   244 LQRYAILTPETWPRWR--------GDERQGVQHLLRAVN-------MEPD 278  

                   eyqiGkTKvFlRnpgqlaeLEelRee<-*
                   +yq+G TKvF +np++l++LEe+Re+   
   mFLJ00395   279 QYQMGSTKVFVKNPESLFLLEEMRER    304  

SH3: domain 1 of 1, from 657 to 711: score 79.7, E = 3.7e-19
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      ++++AlY y +q+ dELsF+ +++i++l ++++gWw+G+l+  G+eG
   mFLJ00395   657    PRCRALYQYIGQDVDELSFNVNEVIEILIEDSSGWWKGRLH--GQEG 701  

                   lfPsnYVeeie<-*
                   lfP+nYV e+    
   mFLJ00395   702 LFPGNYV-EKI    711  

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