hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msj/msj07104/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00395 ( 711 res) msj07104 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Myosin_tail_2 Myosin tail 238.7 8.3e-68 1 SH3_1 SH3 domain 74.9 1.7e-18 1 SH3_2 Variant SH3 domain 50.4 3.9e-11 1 IQ IQ calmodulin-binding motif 16.7 0.57 1 Myosin_head Myosin head (motor domain) -16.1 4e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Myosin_head 1/1 1 290 [. 1 795 [] -16.1 4e-14 IQ 1/1 307 327 .. 1 21 [] 16.7 0.57 Myosin_tail_2 1/1 329 531 .. 1 242 [] 238.7 8.3e-68 SH3_1 1/1 657 711 .] 1 58 [] 74.9 1.7e-18 SH3_2 1/1 658 711 .] 1 69 [] 50.4 3.9e-11 Alignments of top-scoring domains: Myosin_head: domain 1 of 1, from 1 to 290: score -16.1, E = 4e-14 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrlp + mFLJ00395 1 -----------------------Y----------------------- 1 iYteeiiakYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA mFLJ00395 - -------------------------------------------------- - GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqiLqsNPiLEA mFLJ00395 - -------------------------------------------------- - FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy mFLJ00395 - -------------------------------------------------- - QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc g mFLJ00395 2 --------------------------------------------G----- 2 ytvyrrDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNie mFLJ00395 - -------------------------------------------------- - GFkqdqatTGkeeqAGvtvsedteealeiiaeLLGvDaeeLekaLlsrri mFLJ00395 - -------------------------------------------------- - ktGgggkrretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsa mFLJ00395 - -------------------------------------------------- - keQasdSrGGqaaegdDTVSITVVdlPraaldkranfIGvLDIyGFEIFa FEIF mFLJ00395 3 ---------------------------------------------FEIF- 6 ekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnq +kN+FEQ+cIN+vNEKLQQ+F+++++k+EQEEY++EgI Wt+I+y ++n+ mFLJ00395 7 QKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEY-FNNK 55 acidLIEkKmkPpGIlslLDEeCrfPka....tDqtFldKLlqtfsskhp +++dLIE+K PpGI+s LD++C +++a++++ Dqt+l+KL ++ + h mFLJ00395 56 IVCDLIENKLSPPGIMSVLDDVCATMHAtgggADQTLLQKLQAAV-GTHE 104 rlthFaqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfd hF + ++F i+HYAG+V Y+++gf+e N+D+Lf mFLJ00395 105 ---HF-NSW-----------SAGFVIHHYAGKVSYDVSGFCERNRDVLFS 139 dlisllksSsdvpllaeLFpeeelseaAnrrnkapdfeadfdeeeaaaks dli+l++sS+ ++l+ LFpe + mFLJ00395 140 DLIELMQSSDQ-DFLRMLFPEKLN-------------------------- 162 aklgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIK ++k+ ++ T+gs++k + + L+ tL ++ +PH++RCIK mFLJ00395 163 --------IDKKG-RP-STAGSKIKKQANDLVSTLKKC---TPHYIRCIK 199 PNekKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYr PNe K+++++++s+V+hQ+ +lG+ E +iR+rraGF++R f++FlqRY mFLJ00395 200 PNETKRPRDWEESRVKHQVEYLGLRE-NIRVRRAGFAYRRQFSKFLQRYA 248 lLapktwpsgfrpkwvgdakkgceliLqslrqtpgnldkeeyrfGkTKiF +L+p+tw p+w gd+++g++ +L + n+++++y++G TK+F mFLJ00395 249 ILTPETW-----PRWRGDERQGVQHLLRAV-----NMEPDQYQMGSTKVF 288 fR<-* + mFLJ00395 289 VK 290 IQ: domain 1 of 1, from 307 to 327: score 16.7, E = 0.57 *->rraaikIQaawRGylaRkryk<-* a +IQ+awR+++a ++y+ mFLJ00395 307 DGFARTIQKAWRRHVAVRKYE 327 Myosin_tail_2: domain 1 of 1, from 329 to 531: score 238.7, E = 8.3e-68 *->lKvqAseifkGKKerrrqSvlsvRkFrGDYLgleeInpklqdalasq ++ +As i+ +KKerrr+S++ R+F+GDYLglee +p+l ++la+ mFLJ00395 329 MREEASNILLNKKERRRNSIN--RNFVGDYLGLEE-RPELRQFLAKR 372 egqiideLrkdFgkVlFadkgevLVvKfnRsLsgKpspRiLlLTdkalYl e +V+Fad V+K++R ++Kp +R+L+LT+k++Y+ mFLJ00395 373 E------------RVDFADS----VTKYDR--RFKPIKRDLILTPKCVYV 404 vdrkkkKkgpEKdqktyqlKrripLseItsiSlSplsDdlfViHvkedla ++r+k+K gpEK+ ++lK++++++++ ++SlS+ +Dd+f++ mFLJ00395 405 IGREKVKRGPEKGLVREVLKKKLDIQALRGVSLSTRQDDFFILQ------ 448 kgkgDlvlesdhkqPkkeeRiTElvtvLvktyksatggneLnvnqfsdsi +D++les +k TE+v +L+k +++a ++ +L++ fsd + mFLJ00395 449 EEAADSFLESIFK--------TEFVSLLCKRFEEAARR-PLPLT-FSDLL 488 eynlkkekfgpGkkktvkfqkdatsgvellifkkkkghlvsiapq<-* ++++kke++g+G+++ v+f+++ ++ + + + ++ +si+++ mFLJ00395 489 QFRVKKEGWGGGSTRNVTFSRGTGDLA--VLKAGGRALTISIGDG 531 SH3_1: domain 1 of 1, from 657 to 711: score 74.9, E = 1.7e-18 *->kkvvALYDYearesdELsFkkGDvitvleksddgWWkgrlkgtgGke ++++ALY Y +++ dELsF ++vi++l ++ +gWWkgrl+ G+e mFLJ00395 657 PRCRALYQYIGQDVDELSFNVNEVIEILIEDSSGWWKGRLH---GQE 700 GliPsNYVepv<-* Gl+P NYVe++ mFLJ00395 701 GLFPGNYVEKI 711 SH3_2: domain 1 of 1, from 658 to 711: score 50.4, E = 3.9e-11 *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskdddgwwl ++ra+ y++ +d +e Ls+ +++v++++ +d+ gww mFLJ00395 658 RCRALYQYIG-QDVDE------LSFNVNEVIEIL----IEDSSGWWK 693 geslggGrrrRGlvPssaveel<-* g++ +G++ Gl+P ++ve++ mFLJ00395 694 GRL--HGQE--GLFPGNYVEKI 711 //