hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03491/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00394  ( 310 res)   mbh03491

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UBX      UBX domain                                      15.7      0.035   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBX        1/1     199   278 ..     1    90 []    15.7    0.035

Alignments of top-scoring domains:
UBX: domain 1 of 1, from 199 to 278: score 15.7, E = 0.035
                   *->ekaedvcrlqiRlPDGsRlvrrFnssdtlqdvydfvdshrygadepe
                        ++ ++ +++RlPDG  l+ +F + ++l++++ fv   +  +  p 
   mFLJ00394   199    LRKYTYALVRVRLPDGCLLQGTFYAREKLSALFRFVREALQNDWLP- 244  

                   dYkheFeFsLltpfPrrlltkldesktLkeagllpnstlvlep<-*
                          F+L  +   +l  ++     L+e gl p++ l + +   
   mFLJ00394   245 -------FELRASGGQKLEENEA--LALNECGLVPSALLTFSW    278  

//