hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid31005/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00392  ( 445 res)   mid31005

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                 58.8    6.9e-13   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/3     107   136 ..     1    30 []     0.2  4.4e+03
ANK        2/3     140   169 ..     1    30 []    25.8   0.0059
ANK        3/3     173   202 ..     1    30 []    32.8  4.8e-05

Alignments of top-scoring domains:
ANK: domain 1 of 3, from 107 to 136: score 0.2, E = 4.4e+03
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                          +L  Aa++++le v+ +l +g+++n+   
   mFLJ00392   107    PPSVALLEAAARNDLEEVRQFLTSGVSPNL    136  

ANK: domain 2 of 3, from 140 to 169: score 25.8, E = 0.0059
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG T+LH ++  +  e+++ Lld+gad+na   
   mFLJ00392   140    DGLTALHQCCIDDFQEMAQQLLDAGADVNA    169  

ANK: domain 3 of 3, from 173 to 202: score 32.8, E = 4.8e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + +TpLH Aa  g+l++v+lL+++gad+ a   
   mFLJ00392   173    ECWTPLHAAATCGHLHLVELLISRGADLLA    202  

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