hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid31005/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00392  ( 445 res)   mid31005

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                  79.5    6.7e-20   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/3     107   139 ..     1    33 []     4.9       40
Ank        2/3     140   172 ..     1    33 []    35.0  1.8e-06
Ank        3/3     173   205 ..     1    33 []    41.7  1.6e-08

Alignments of top-scoring domains:
Ank: domain 1 of 3, from 107 to 139: score 4.9, E = 40
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                          +L  Aa r++le v+ +l  G ++n+ +    
   mFLJ00392   107    PPSVALLEAAARNDLEEVRQFLTSGVSPNLANE    139  

Ank: domain 2 of 3, from 140 to 172: score 35.0, E = 1.8e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG T+LH  ++ +  e+++ Ll++GAd+na+d    
   mFLJ00392   140    DGLTALHQCCIDDFQEMAQQLLDAGADVNARDS    172  

Ank: domain 3 of 3, from 173 to 205: score 41.7, E = 1.6e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +TPLH Aa +g+l +v+lL+s+GAdl a++    
   mFLJ00392   173    ECWTPLHAAATCGHLHLVELLISRGADLLAVNS    205  

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