hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk00857/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00389  ( 412 res)   mtk00857

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MATH     meprin and TRAF homology                        80.9    1.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MATH       1/1     267   389 ..     1   123 []    80.9  1.5e-19

Alignments of top-scoring domains:
MATH: domain 1 of 1, from 267 to 389: score 80.9, E = 1.5e-19
                   *->vlshtfknvSkfKLa.teegesyfSpseeh.kggfnipWrlkikrkG
                      +++ ++++  ++  + ++   s+fSp ++  k+g++++ rl+++ +G
   mFLJ00389   267    WKITNVTKRCHE--SvCGRTVSLFSPAFYTaKYGYKLCLRLYLNGDG 311  

                   .gkngflglyLhCekeeceerlevkWsieaeftlkLvsqnGkslrsvirh
                   +gk+++l+l+   +++e++++l  +W+++ ++t++L++qn+++      h
   mFLJ00389   312 sGKKTHLSLFIVIMRGEYDALL--PWPFRNKVTFMLLDQNNRE------H 353  

                   .v.kfaskkdthvFe.....kpsgwGfskFisWddL<-*
                    +++f+ + +++ F++++++++ ++G++ F+++++L   
   mFLJ00389   354 aIdAFRPDLSSASFQrpqseTNVASGCPLFFPLSKL    389  

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