hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk00857/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00389  ( 412 res)   mtk00857

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MATH     MATH domain                                    121.9    1.2e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MATH       1/1     269   410 ..     1   150 []   121.9  1.2e-32

Alignments of top-scoring domains:
MATH: domain 1 of 1, from 269 to 410: score 121.9, E = 1.2e-32
                   *->iknfSslkk......egeeyytspyeerfnipWrllriyrnggge.r
                      i+n++++ +++  +++++ +++++y+  ++++ + lr+y+ng+g+++
   mFLJ00389   269    ITNVTKRCHesvcgrTVSLFSPAFYTAKYGYKLC-LRLYLNGDGSgK 314  

                   hgkflglyLhClkeekdcptienlkWsieteftlklvsdnGksirRmssv
                    +++l+l+++ +++e+d     +l+W+++ + t++l+++n++      ++
   mFLJ00389   315 -KTHLSLFIVIMRGEYDA----LLPWPFRNKVTFMLLDQNNRE-----HA 354  

                   tlskkpkdatnnshvFdkptkgegwgksGfkkFisWddLeddyngylvdD
                   +++++p+    +s +F++p ++e + +sG++ F+++++L+++ ++y++dD
   mFLJ00389   355 IDAFRPDL---SSASFQRP-QSETNVASGCPLFFPLSKLQSPKHAYVKDD 400  

                   sitiEaeVkI<-*
                   +++  + V+    
   mFLJ00389   401 TMFLKCIVDT    410  

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