hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh01286/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00385  ( 303 res)   msh01286

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IGc1     Immunoglobulin C-Type                          130.2    2.3e-34   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IGc1       1/2      43   118 ..     1    78 []    13.2   0.0072
IGc1       2/2     149   222 ..     1    78 []   122.1  6.3e-32

Alignments of top-scoring domains:
IGc1: domain 1 of 2, from 43 to 118: score 13.2, E = 0.0072
                   *->katLvClvsgFy..PpdItVeWlknGqqkeevtsgvkttdplkepsd
                      +  ++C v + +++ pd++V+W+++ +     + ++  t+p+    +
   mFLJ00385    43    TPKVTCVVVDVSedDPDVHVSWFVDNK-----EVHTAWTQPREAQYN 84   

                   gtYflsSyLtvsa.twesgdvYtCqVtHegLtnp<-*
                   +t+ + S L  + ++w +g+++ C+V   +L+ p   
   mFLJ00385    85 STFRVVSALPIQHqDWMRGKEFKCKVNNKALPAP    118  

IGc1: domain 2 of 2, from 149 to 222: score 122.1, E = 6.3e-32
                   *->katLvClvsgFyPpdItVeWlknGqqkeevtsgvkttdplkepsdgt
                      k++L+Clv++F+ + I+VeW +nG+     ++++k+t+p+++ sdgt
   mFLJ00385   149    KVSLTCLVTNFFSEAISVEWERNGE----LEQDYKNTPPILD-SDGT 190  

                   YflsSyLtvsa.twesgdvYtCqVtHegLtnp<-*
                   Yfl+S+Ltv+++ w +g+ +tC+V+He+L+n+   
   mFLJ00385   191 YFLYSKLTVDTdSWLQGEIFTCSVVHEALHNH    222  

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