hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh01286/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00385  ( 303 res)   msh01286

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C1-set   Immunoglobulin C1-set domain                   179.4    5.9e-50   2
ig       Immunoglobulin domain                           44.8    1.9e-09   2
C2-set_2 CD80-like C2-set immunoglobulin domain          13.7      0.022   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ig         1/2      41   110 ..     1    65 []    17.2     0.39
C1-set     1/2      31   120 ..     1    92 []    64.9  1.7e-15
ig         2/2     147   214 ..     1    65 []    29.4  8.3e-05
C2-set_2   1/1     136   223 ..     1   101 []    13.7    0.022
C1-set     2/2     139   225 ..     1    92 []   118.8  9.9e-32

Alignments of top-scoring domains:
ig: domain 1 of 2, from 41 to 110: score 17.2, E = 0.39
                   *->GesvtLtCsvs..gfgppdvtvtWlrngk.ltgvlvtssenngdsty
                        + + tC v + ++ +pdv+v+W++++k+++   +   e + +st+
   mFLJ00385    41    SLTPKVTCVVVdvSEDDPDVHVSWFVDNKeVHTAWTQPREAQYNSTF 87   

                   qt..sLtitnvtpeDggtYtCvv<-*
                   +  + L i+  ++  g +++C v   
   mFLJ00385    88 RVvsALPIQHQDWMRGKEFKCKV    110  

C1-set: domain 1 of 2, from 31 to 120: score 64.9, E = 1.7e-15
                   *->ppgspepel..gkpntLvClVtgFyP..pdItVtWlkNGqevtegve
                      pp +p + l  + +  ++C V + + ++pd+ V+W+++++ev+++ +
   mFLJ00385    31    PP-KPKDALmiSLTPKVTCVVVDVSEddPDVHVSWFVDNKEVHTAWT 76   

                   steplpkngDgtYqlsSyLtftasepesgdsYtCrVeHesLkvenePlt<
                      +++   ++t+++ S L+++++++ +g++++C+V  ++L+    P++ 
   mFLJ00385    77 QPREAQ--YNSTFRVVSALPIQHQDWMRGKEFKCKVNNKALP---APIE  120  

                   -*
                     
   mFLJ00385     -    -    

ig: domain 2 of 2, from 147 to 214: score 29.4, E = 8.3e-05
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                       ++v+LtC v++f+++ ++v W rng   ++   +    ++++ ++ 
   mFLJ00385   147    KKKVSLTCLVTNFFSEAISVEWERNGElEQdYKNTPPILDSDGTYFL 193  

                   t.sLtitnvtpeDggtYtCvv<-*
                   ++ Lt+   ++  g+++tC v   
   mFLJ00385   194 YsKLTVDTDSWLQGEIFTCSV    214  

C2-set_2: domain 1 of 1, from 136 to 223: score 13.7, E = 0.022
                   *->peIeppasllegeksenlevvatCvlpysag..GkPapritWyldgk
                       +I pp ++   +     +v +tC+   +++  ++ a ++ W+++g+
   mFLJ00385   136    YTIPPPREQMSKK-----KVSLTCL---VTNffSE-AISVEWERNGE 173  

                   elvpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsyg
                            +++ +  +  + g+y ++S+L++ + +   g ++tC+v ++
   mFLJ00385   174 LE------QDYKNTPPILDSDGTYFLYSKLTVDTDSWLQGEIFTCSVVHE 217  

                   alrgsk<-*
                   al+  +   
   mFLJ00385   218 ALHNHH    223  

C1-set: domain 2 of 2, from 139 to 225: score 118.8, E = 9.9e-32
                   *->ppgspepel.gkpntLvClVtgFyPpdItVtWlkNGqevtegveste
                      pp ++e ++++k+++L+ClVt+F+ + I+V+W +NG+   e  ++++
   mFLJ00385   139    PP-PRE-QMsKKKVSLTCLVTNFFSEAISVEWERNGEL--EQDYKNT 181  

                   plpkngDgtYqlsSyLtftasepesgdsYtCrVeHesLkvenePlt<-*
                   p+ +++DgtY+l+S+Lt+  + + +g+++tC+V He+L+  n++++   
   mFLJ00385   182 PPILDSDGTYFLYSKLTVDTDSWLQGEIFTCSVVHEALH--NHHTQ    225  

//