hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid21056/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00383  ( 487 res)   mid21056

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
ATP-synt_S1 Vacuolar ATP synthase subunit S1 (ATP6S1)   983.4   5.5e-292   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
ATP-synt_S1   1/1      50   487 .]     1   480 []   983.4 5.5e-292

Alignments of top-scoring domains:
ATP-synt_S1: domain 1 of 1, from 50 to 487: score 983.4, E = 5.5e-292
                   *->llliavvilaaaaqQvPvlLWssdrslwptlaakhvGhttsdvqlve
                      l+++a++  +a +qQvP++LWssdr lw+++a++h+Gh+tsd+ql++
   mFLJ00383    50    LVAVAAA--VATEQQVPLVLWSSDRNLWAPVADTHEGHITSDMQLST 94   

                   yLdPAlllgphnVllFlqdkLSieDFlaygGvfGNkqDSaFlnlqsEATQ
                   yLdPAl+lgp+nVllFlqdkLSieDF+aygGvfGNkqDSaF+nl++    
   mFLJ00383    95 YLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNLEN---- 140  

                   AQWLSSADalsaSssslvlpavdWTameslatylqeklsvSalhidsstl
                           al++++sslvlpavdW+a+++l+tylqekl++S+lh+d++tl
   mFLJ00383   141 --------ALDLAPSSLVLPAVDWYAISTLTTYLQEKLGASPLHVDLATL 182  

                   aelKLnssvkslltvrLpytsesgaaaekevLesnDavIGqVLstleSed
                   +elKLn+s+++ll++rLpyt++sg++a++evL++nD+vIGqVLstl+Sed
   mFLJ00383   183 KELKLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLKSED 232  

                   vPYtaaltsvkPsVQRRtirDaavtaGhslGRqLLqttvpvpskkPPVlY
                   vPYtaalt+v+Ps   R++rD  ++aG +lGRqLLqt+v++p+++PPV+Y
   mFLJ00383   233 VPYTAALTAVRPS---RVARDITMVAG-GLGRQLLQTQVASPAIHPPVSY 278  

                   ndtAyiPcilFWATWAYSetlsvayngtqiDltslifngneldlTGsfcn
                   ndtA  P+ilFWA     +++svay+++++Dltsl+f++++l+lTGsf+n
   mFLJ00383   279 NDTA--PRILFWA-----QNFSVAYKDEWKDLTSLTFGVENLNLTGSFWN 321  

                   nskAtLmKKkdsltydttlagkpltfdfllkarffpvSarvyfvmksvev
                   +s+A+L     slty ++l+g+++tf+f+l++rf+pvSar++f m+++e+
   mFLJ00383   322 DSFAML-----SLTY-EPLFGATVTFKFILASRFYPVSARYWFAMERLEI 365  

                   dgsgdvanFnTasqkvNaPatySfhCgnvsSqatfgsllVqnvrndvals
                   +++g+va+Fn +sq v++P++ySfhC++vsS +++g llV+nv+     s
   mFLJ00383   366 HSNGSVAHFN-VSQ-VTGPSIYSFHCEYVSSVSKKGNLLVTNVP-----S 408  

                   kWqLslknfQiQaPFnVTYgedFsfasSeDCaGFFSpGIWMGLvttLLll
                    Wq++l+nfQiQa FnVT ge+Fs+as  DCaGFFSpGIWMGL+ttL++l
   mFLJ00383   409 VWQMTLHNFQIQA-FNVT-GEQFSYAS--DCAGFFSPGIWMGLLTTLFML 454  

                   fILtyGlhMimslkTMDRFDDPKGptItinqae<-*
                   fI+tyGlhMi+slkTMDRFDD KGptIt++q++   
   mFLJ00383   455 FIFTYGLHMILSLKTMDRFDDHKGPTITLTQIV    487  

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