hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01522/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00381  ( 410 res)   mbh01522

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SCA7     SCA7                                           127.2    3.1e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SCA7       1/1      17    93 ..     1    81 []   127.2  3.1e-34

Alignments of top-scoring domains:
SCA7: domain 1 of 1, from 17 to 93: score 127.2, E = 3.1e-34
                   *->tkkkkkekkknnrkelkkpkekkevDvdkQCGVilPeGkkvCaRSLT
                       +++k + +++       +   ke+D+++QCGVi+Pe+kk+C+R+LT
   mFLJ00381    17    GSSPKWTCDSL----EPLSPTGKEFDLNRQCGVINPETKKICTRLLT 59   

                   CKsHSmgaKRAVqGRskpyDvLLaeyqkknqaKe<-*
                   CK+HS++++R+V+GR+k++DvL+ae++++++++e   
   mFLJ00381    60 CKIHSVHQRREVPGRAKDFDVLVAELKASSRKGE    93   

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