hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00559/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00380  ( 767 res)   mpg00559

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BRLZ     basic region leucine zipper, DNA-binding        43.8    2.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BRLZ       1/1     647   711 ..     1    65 []    43.8  2.2e-08

Alignments of top-scoring domains:
BRLZ: domain 1 of 1, from 647 to 711: score 43.8, E = 2.2e-08
                   *->ekdeKrrrRrerNReAArrsReRKkayieeLedkveeLeaENesLrk
                         ++++rRr +N+ AA+ +R+RK + i +Le+ ve+L+  +++L++
   mFLJ00380   647    LSLIRDIRRRGKNKMAAQNCRKRKLDTILNLERDVEDLQRDKARLLR 693  

                   eleqLrreleklkselee<-*
                   e  +  r l+++k+++++   
   mFLJ00380   694 EKVEFLRSLRQMKQKVQS    711  

//