hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00559/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00380  ( 767 res)   mpg00559

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
bZIP_1   bZIP transcription factor                       19.0     0.0085   1
bZIP_2   Basic region leucine zipper                     15.9       0.11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
bZIP_2     1/1     647   704 ..     1    57 []    15.9     0.11
bZIP_1     1/1     647   711 ..     1    65 []    19.0   0.0085

Alignments of top-scoring domains:
bZIP_2: domain 1 of 1, from 647 to 704: score 15.9, E = 0.11
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLL.
                       +  +  rRr +N +AA+++R++k   +  le  v++L++ +a+LL+
   mFLJ00380   647    LSLIRDIRRRGKNKMAAQNCRKRKLDTILNLERDVEDLQRDKARLLr 693  

                   krqkveqLekE<-*
                    +++  +  ++   
   mFLJ00380   694 EKVEFLRSLRQ    704  

bZIP_1: domain 1 of 1, from 647 to 711: score 19.0, E = 0.0085
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNka.Lr
                         ++  rR+ kN+ AA+ +R+RK+  i +Le+ ve L     + Lr
   mFLJ00380   647    LSLIRDIRRRGKNKMAAQNCRKRKLDTILNLERDVEDLQRDKARlLR 693  

                   kelerLkkevakLksenee<-*
                   +++e L+ + + +k+++ +   
   mFLJ00380   694 EKVEFLRSLRQ-MKQKVQS    711  

//