hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12243/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00377  ( 226 res)   mpm12243

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
FAD_binding_6 Oxidoreductase FAD-binding domain          92.1    1.1e-23   1
NAD_binding_1 Oxidoreductase NAD-binding domain          15.4    0.00045   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
FAD_binding_6   1/1      23   120 ..     1   111 []    92.1  1.1e-23
NAD_binding_1   1/1     129   221 ..     1   124 []    15.4  0.00045

Alignments of top-scoring domains:
FAD_binding_6: domain 1 of 1, from 23 to 120: score 92.1, E = 1.1e-23
                   *->katlvekeelShDtriFrfaLpspdqvlgLPpGQhvflrlpdidGkl
                      ++ ++  e +++Dt ++rf Lp    +lgL+pGQh+ lr   +dG +
   mFLJ00377    23    AFHISTMEKVTKDTYLVRFTLP-GNSRLGLRPGQHLILRGV-VDGLE 67   

                   vvRaYSPaSspddvGrleLlVKvyFknvhPkfPpGGkmSqyLfdsqlkvG
                   + RaY+P+S   + G+++ l+K y         + G+mSqy  +s  + G
   mFLJ00377    68 IQRAYTPISPVTAEGYFDVLIKCY---------RTGLMSQYV-ES-WRTG 106  

                   dtvevkGPlGhFeY<-*
                   dt   +GP G+F Y   
   mFLJ00377   107 DTAFWRGPFGSFLY    120  

NAD_binding_1: domain 1 of 1, from 129 to 221: score 15.4, E = 0.00045
                   *->lmiaGGtGiaPlysvlkalledpelegyvdgtkvvlvyGnrteddll
                      lm+a+GtG+aP++++l+ + +d++     d+t v+lv  ++t + ++
   mFLJ00377   129    LMLAAGTGLAPMVPILQSITDDED-----DETFVTLVGCFKTFEGIY 170  

                   lreEleelakkypnvfrlkvvavvssrtddgwyGrkGyVtdalleellse
                   l+  ++e ++++ n   +++  v+s + ++ +y +  + t++l ++    
   mFLJ00377   171 LKTFFQE-QARFWN---VQTFFVLSQASPSPSYRGGSRLTEVL-DQGGA- 214  

                   lwelidldgtdvYvCGDPppMmkavrk<-*
                                  G P      v+    
   mFLJ00377   215 -----RT--------G-P------VCL    221  

//