hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07794/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00376  ( 931 res)   mbg07794

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IGc2     Immunoglobulin C-2 Type                        114.9      9e-30   2
FN3      Fibronectin type 3 domain                      114.8    9.7e-30   3
IG       Immunoglobulin                                  84.0    1.9e-20   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IGc2       1/2      61   124 ..     1    56 []    51.8    9e-11
IG         1/2      55   138 ..     1    58 []    43.0    4e-08
IGc2       2/2     153   216 ..     1    56 []    63.2  3.2e-14
IG         2/2     146   227 ..     1    58 []    41.1  1.5e-07
FN3        1/3     289   375 ..     1    69 []    33.6  2.8e-05
FN3        2/3     423   507 ..     1    69 []    51.9  8.2e-11
FN3        3/3     529   616 ..     1    69 []    31.7   0.0001

Alignments of top-scoring domains:
IGc2: domain 1 of 2, from 61 to 124: score 51.8, E = 9e-11
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv
                        Gqs++L+C asg p p +tW k+g++++  ++++   s L i   
   mFLJ00376    61    TKGQSLILECVASGIPPPRVTWAKdGSSIAaynktrfLLSNLLIDTT 107  

                   sleDsGlYtCvArNsvg<-*
                   s+eDsG+Y+C A+N vg   
   mFLJ00376   108 SEEDSGTYRCMASNGVG    124  

IG: domain 1 of 2, from 55 to 138: score 43.0, E = 4e-08
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       ++v v  G+s+ L+C as+ +++++tW +++++    ++++   ++
   mFLJ00376    55    AQtVIVTKGQSLILECvASgipppRVTWAkdgssiaaynktrfllsn 101  

                   LtI.nvtpeDsesgGtYtCaat.....sgsasseqgttLtVl<-*
                   L I+  ++eDs   GtY+C+a+++ ++ g a      +++V+   
   mFLJ00376   102 LLIdTTSEEDS---GTYRCMASngvgdPGAAVI--LYNVQVF    138  

IGc2: domain 2 of 2, from 153 to 216: score 63.2, E = 3.2e-14
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv
                        Gqs+ LtC+++g+p p++ Wl++  pl ++++ + s+  L++ +v
   mFLJ00376   153    PWGQSAKLTCEVRGNPPPSVLWLRnAVPLTssqrlrlSRRALRVVSV 199  

                   sleDsGlYtCvArNsvg<-*
                    +eD+G+Y+C A+N+vg   
   mFLJ00376   200 GPEDEGVYQCMAENAVG    216  

IG: domain 2 of 2, from 146 to 227: score 41.1, E = 1.5e-07
                   *->pp.vtvke.GesvtLtC.as.....titWy.................
                        +++v + G+s++LtC++ +++++++ W+++  + +++++ + +++
   mFLJ00376   146    ELsQLVIPwGQSAKLTCeVRgnpppSVLWLrnavpltssqrlrlsrr 192  

                   .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                    L++ +v peD+   G+Y+C+a++  gsa++   ++L+     
   mFLJ00376   193 aLRVvSVGPEDE---GVYQCMAEnaVGSAHA--VVQLRTA    227  

FN3: domain 1 of 3, from 289 to 375: score 33.6, E = 2.8e-05
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                        +P     l+   +++t     +s +l W p +++++  +i++Y++
   mFLJ00376   289    AEAPII---LSSPRTSKT-----DSYELVWRPRhegssrtpILYYVv 327  

                   .......................ytltgLkPgaepwteYefrVrAvngnd
                   + +++++++++++ ++ + ++ + tlt L Pg    + Ye+  +A+n   
   mFLJ00376   328 khrkvtnssddwtisgipanqhrLTLTRLDPG----SLYEVEMAAYNC-- 371  

                   aGeg<-*
                   aGeg   
   mFLJ00376   372 AGEG    375  

FN3: domain 2 of 3, from 423 to 507: score 51.9, E = 8.2e-11
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY
                      P +P +   ++++  ++t      sv ++W p ++++ +  + +v+Y
   mFLJ00376   423    PEAPDR---PTISTASET------SVYVTWIPRgnggfpiqsfRVEY 460  

                   r.....................ytltgLkPgaepwteYefrVrAvngnda
                   ++ ++++++   ++  ++++ ++ +tgL+ g      Y+frVrA n    
   mFLJ00376   461 KklkkvgdwilatsaippsrlsVEITGLEKG----ISYKFRVRALNM--L 504  

                   Geg<-*
                   Ge+   
   mFLJ00376   505 GES    507  

FN3: domain 3 of 3, from 529 to 616: score 31.7, E = 0.0001
                   *->PgpPsnptelrvtdvtststsdltsvtlsWe.pP...........iv
                      P + +    +++td  +      t++ l+W   P ++++ + ++  +
   mFLJ00376   529    PVAGPY---ITFTDAVNE-----TTIMLKWMyIPasnnntpihgfYI 567  

                   gYr.....................ytltgLkPgaepwteYefrVrAvngn
                   +Yr+++++++++ +++ +++++ ++ +++L+P     t Y ++ +++n+ 
   mFLJ00376   568 YYRptdsdndsdykkdmvegdrywHSISHLQPE----TSYDIKMQCFNE- 612  

                   daGeg<-*
                    +Ge+   
   mFLJ00376   613 -GGES    616  

//