hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msp/msp00355/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00374  ( 223 res)   msp00355

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Mob1_phocein Mob1/phocein family                        380.7   1.5e-110   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Mob1_phocein   1/1      38   215 ..     1   178 []   380.7 1.5e-110

Alignments of top-scoring domains:
Mob1_phocein: domain 1 of 1, from 38 to 215: score 380.7, E = 1.5e-110
                   *->qkyveatLgsgvdLktiVkLPeGeDlnEWiAvHvvdFFnqiNllYGt
                       k ++a+L+sg+dL+ +V+LP+Ge  ++WiAvHvvdFFn+iNl+YGt
   mFLJ00374    38    YKKAQASLKSGLDLRSVVRLPPGESIDDWIAVHVVDFFNRINLIYGT 84   

                   isefCtpqtCPqMsAgpryeYlWaDgkekkKPtrlpApqYIdylldWien
                    +e C++++CP+M +gpryeY+W+D+  +++P +l+Ap+Y+ +l+dWie 
   mFLJ00374    85 MAEHCSESSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEG 134  

                   qlndeklFPtkvgvpFPknFeqivkkIlrRLFRvfaHiYihHFdeiveLg
                   ++nde++FPt+vgvpFPknF q++ kIl+RLFRvf+H+YihHFd+i+ +g
   mFLJ00374   135 LINDEDVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMG 184  

                   lEaHlNtsFkHFvfFvreFnLiDrkelepLk<-*
                   +EaH+Nt++kHF++F +eF+L+D +elepL+   
   mFLJ00374   185 AEAHVNTCYKHFYYFIQEFSLVDQRELEPLR    215  

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