hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj06275/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00373  ( 538 res)   msj06275

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPases associated with a variety of cellula    48.8    7.2e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/1      53   198 ..     1    92 []    48.8  7.2e-10

Alignments of top-scoring domains:
AAA: domain 1 of 1, from 53 to 198: score 48.8, E = 7.2e-10
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge...........
                      +g+++++vGppG+GKT + r +a+ lg+ + +i++ +  ++++ +++
   mFLJ00373    53    KGPILCFVGPPGVGKTSVGRSVAKTLGREFHRIALGgvcdqsdirgh 99   

                   ....ggqrirlalalark.....dvlllDEitslld..............
                   ++   g +   +++ ++  + +++v llDE+++l ++++++    +++ +
   mFLJ00373   100 rrtyVGSMPGRIINGLKTvgvnnPVFLLDEVDKLGKslqgdpaaallevl 149  

                   .....................vtviattn..dldpallrrrfdrrivllr
                   + +++++  ++ ++   ++++v +iat+n++ ++p +l    dr  ++  
   mFLJ00373   150 dpeqnhnftdhylnvafdlsqVLFIATANttATIPPALL---DRMEIIQV 196  

                   il<-*
                   ++   
   mFLJ00373   197 PG    198  

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