hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msj/msj06275/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00373 ( 538 res) msj06275 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Lon_C Lon protease (S16) C-terminal proteolytic do 395.6 4.8e-115 1 AAA ATPase family associated with various cellul 162.3 8.2e-45 1 AAA_5 ATPase family associated with various cellul 39.8 6e-08 1 AAA_3 ATPase family associated with various cellul 1.3 0.0015 1 AAA_2 ATPase family associated with various cellul -38.8 0.047 1 NACHT NACHT domain -45.0 0.84 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- AAA_3 1/1 57 193 .. 1 133 [] 1.3 0.0015 AAA_2 1/1 54 194 .. 1 197 [] -38.8 0.047 AAA_5 1/1 56 199 .. 1 184 [] 39.8 6e-08 NACHT 1/1 55 216 .. 1 210 [] -45.0 0.84 AAA 1/1 56 251 .. 1 216 [] 162.3 8.2e-45 Lon_C 1/1 314 523 .. 1 207 [] 395.6 4.8e-115 Alignments of top-scoring domains: AAA_3: domain 1 of 1, from 57 to 193: score 1.3, E = 0.0015 *->HvLlegvPGlaKTllvkalAkaldlkfkRiQaFTpDLlPsDilGtev + g PG++KT + +++Ak+l+ +f+Ri + sDi G++ mFLJ00373 57 -LCFVGPPGVGKTSVGRSVAKTLGREFHRIA-LGGVCDQSDIRGHRR 101 ydektrefefkkG....PvFanllLADEINRappKtQ....sALLEaM.. + ++ +G ++ v + + L DE+ Q+++ +ALLE++++ mFLJ00373 102 TYVGSMPGRIINGlktvGVNNPVFLLDEVDKLGKSLQgdpaAALLEVLdp 151 .eElrqVT..vdgethkLpepFlVlATqNPieqeGtYpLPEAqlDRFll< ++ ++ T++ ++ ++L++ + +AT N t P A lDR + mFLJ00373 152 eQN-HNFTdhYLNVAFDLSQVLF-IATANT-----TATIPPALLDRMEI 193 -* mFLJ00373 - - AAA_2: domain 1 of 1, from 54 to 194: score -38.8, E = 0.047 *->rpigsflflGPTGVGKTefdimppGLakaLAelLfvgdekaliriDM pi f+GP GVGKT + +A++L +++ ri mFLJ00373 54 GPI--LCFVGPPGVGKTS-------VGRSVAKTLG----REFHRIAL 87 sEymEAGYVgEevkhsVsrLiGappGYVgyE......egGqLTEaVRRkP + +++ +G+ pG + + ++ + ++ mFLJ00373 88 GGVCD----QSDIRGHRRTYVGSMPGRIINGlktvgvNNP---------- 123 YSVVLlDEIEKAhpkgsigrDVSrEdVq....niLLQvlD...gGrLtVP V LlDE++K + q+++ +LL vlD++++ t mFLJ00373 124 --VFLLDEVDKLGK-----------SLQgdpaAALLEVLDpeqNHNFT-- 158 pqGGRKHdsqGrtVdFr..NtliImTsNfgsekisdardyelkelvmdel d++ V F+ + +l+I+T N + + mFLJ00373 159 -------DHYL-NVAFDlsQVLFIATANTTATIPPA-------------- 186 kkgFiPEFlnRldei<-* +l R+ +i mFLJ00373 187 -------LLDRMEII 194 AAA_5: domain 1 of 1, from 56 to 199: score 39.8, E = 6e-08 *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg +++vGppG+GKt + + +a+ l gr++ ++l + +d+ g mFLJ00373 56 ILCFVGPPGVGKTSVGRSVAKTL----GREFHRIALGGVCDQSDIRG 98 rrn.........iaplleGngttswvdgpLvrAaryaretegslpeghil r++ ++ +++i L++ + + + mFLJ00373 99 HRRtyvgsmpgrII-------------NGLKTVGV----------NNPVF 125 vlDEinraspevln....vLlslLderrlllpdggelvkvppydklaerg +lDE++++ ++ ++++ +Ll +Ld + + +++ ++ + + l + mFLJ00373 126 LLDEVDKLGKSLQGdpaaALLEVLDPEQNH---NFTDHYLNVAFDLSQ-- 170 reeldlwklgrlihdfrlIatsNpldgprglnelsaALrrRFlfvtvdpp + +Iat+N+ +++AL++R+ ++ v+ + mFLJ00373 171 ---------------VLFIATANTTA------TIPPALLDRMEIIQVPGY 199 <-* mFLJ00373 - - NACHT: domain 1 of 1, from 55 to 216: score -45.0, E = 0.84 *->rtvilqGeAGsGKTtLlqklallWaqgklpqgarfdfvFflscrels ++ +G++G+GKT +++a ++++ +++ mFLJ00373 55 PILCFVGPPGVGKTSVGRSVAKTLGREF---------------HRIA 86 rsgeaaalLrsLadlLfsqwpepaapvreKlfeskvwavllelperlLkS g + ++ + ++ r+ ++ + p r+ mFLJ00373 87 LGGVC-------------DQSDIRGHRRT---------YVGSMPGRIING 114 aldppgqttvlilDGlDElvsdlgqpdgelctdwkepqpvrtLLssL... + ++ v++lD D l+ l+ p+ LL L+++ mFLJ00373 115 LKTVGVNNPVFLLDEVDKLGKSLQG------------DPAAALLEVLdpe 152 .........lrkkL.lpgaslLlTsRPdalrkwllrrgLespakRLLELq ++++ +++ l+ + +l+++ ++T+ ++a ++ L + mFLJ00373 153 qnhnftdhyLNVAFdLSQVLFIATANTTAT----IPPALLDR-------- 190 earylevrgFseedrkeyv.rkyfsde<-* +++v+g+ +e++ e+++r+ +++ mFLJ00373 191 -MEIIQVPGYTQEEKIEIAhRHLIPKQ 216 AAA: domain 1 of 1, from 56 to 251: score 162.3, E = 8.2e-45 *->gvLLyGPPGtGKTlLAkavAnelg..vpfisisgselvskyvGesek +++++GPPG+GKT++ ++vA+ lg+++++i ++g+ + s ++G++++ mFLJ00373 56 ILCFVGPPGVGKTSVGRSVAKTLGreFHRIALGGVCDQSDIRGHRRT 102 rvralfelArkslkkaaPs.piiFIDEiDalapkRgdegdvssrvvnqLL +v+ +++++ +lk ++ +p++++DE+D+l+++ + gd++++++++L+ mFLJ00373 103 YVGSMPGRIINGLKTVGVNnPVFLLDEVDKLGKSLQ--GDPAAALLEVLD 150 temDLerigfekhylrgsdv.vDlsnvlviaaTNrpdlldpaLlrpGRfd +e++ + f++hyl +v +Dls+vl+ia++N +++paLl+++ ++ mFLJ00373 151 PEQN---HNFTDHYL---NVaFDLSQVLFIATANTTATIPPALLDRM-EI 193 reievplPdeeerleIlkihlkkmplalcqelselakdvdleelaeelAr +++ ++ + ee++eI+ +hl ++ l + ++l mFLJ00373 194 IQVPGY--TQEEKIEIAHRHLIPKQL----------EQHGLTPQQI---- 227 rtpgfsgadlaa.lcreAalralr<-* +p ++ ++ +++reA++r+l+ mFLJ00373 228 QIPQHTTLAIITrYTREAGVRSLD 251 Lon_C: domain 1 of 1, from 314 to 523: score 395.6, E = 4.8e-115 *->titaknLekyLGvprFryeeaekedqvGvVTGLAWTevGGdlLtIEa i++ L+++LG+p + e e+ +q+Gv+ GLAWT++GG ++++Ea mFLJ00373 314 LIDSHALKDILGPPLYELEVSERLSQPGVAIGLAWTPLGGKIMFVEA 360 timpslGkGkLtLTGqLGDVMKESAqAAlSYVRSraeelGI.....dpdf + m G+G+LtLTGqLGDVMKESA+ A S +RS+a++++ ++ ++ d+ mFLJ00373 361 SRMD--GEGQLTLTGQLGDVMKESAHLAISWLRSNAKKYHLtnafgSFDL 408 fekkDIHIHVPEGAtPKDGPSAGvTmaTALvSaLTGipVrkdVAMTGEIT ++++DIH+H+P+GA+ KDGPSAGvT++T L S++ G+ Vr dVAMTGEIT mFLJ00373 409 LDNTDIHLHFPAGAVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEIT 458 LRGrVLPIGGLKEKlLAAhRaGIktVIiPkeNekDLeeiPenvregLeii LRG VLP+GG+K K+LAAhRaG+k +IiP++NekDLeeiP nvr++L ++ mFLJ00373 459 LRGLVLPVGGIKDKVLAAHRAGLKQIIIPQRNEKDLEEIPSNVRQDLSFV 508 pVeevdeVLklALvr<-* ++ +deVL++A+ + mFLJ00373 509 TASCLDEVLNAAFDG 523 //