hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mlj/mlj04062/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00370  ( 499 res)   mlj04062

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PLDc     Phospholipase D Active site motif               78.4    1.5e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PLDc       1/2     203   230 ..     1    29 []    49.8  6.1e-11
PLDc       2/2     417   443 ..     1    29 []    30.8  3.1e-05

Alignments of top-scoring domains:
PLDc: domain 1 of 2, from 203 to 230: score 49.8, E = 6.1e-11
                   *->ydgrlHqKivvvDdeivafiGgaNldgrs<-*
                      ++g+lH+K++vvD++ ++++G+aN+d+rs   
   mFLJ00370   203    TGGVLHSKFWVVDGR-HVYVGSANMDWRS    230  

PLDc: domain 2 of 2, from 417 to 443: score 30.8, E = 3.1e-05
                   *->ydgrlHqKivvvDdeivafiGgaNldgrs<-*
                         ++H+K++v D++  a++G++N+ + +   
   mFLJ00370   417    FSRVNHSKFMVTDKT--AYVGTSNWSEDY    443  

//