hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh02173/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00369  ( 939 res)   msh02173

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                   78.2    1.7e-19   1
PH       PH domain                                       17.6        0.3   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     438   622 ..     1   207 []    78.2  1.7e-19
PH         1/1     666   778 ..     1    92 []    17.6      0.3

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 438 to 622: score 78.2, E = 1.7e-19
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                      v++Ell TE++ vr L+ l + + +p+ +       +++ d+++ iF
   mFLJ00369   438    VISELLVTEAAHVRMLRVLHDLFYQPMADGG-----FFPLDELQNIF 479  

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlklk
                   + + +++e+h+ FL+ +L +r ++s              + +Gd++l+++
   mFLJ00369   480 PSLDELIEVHSLFLD-RLMKRRQES----------GYLIEEIGDVLLARF 518  

                   .....epflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassn
                   ++ +++ f ++  ++cs++  A e l+      ++p F  f++e e ++ 
   mFLJ00369   519 dgaegSWFQKISSRFCSRQSFALEQLKA--KQRKEPRFCAFVQEAESRPR 566  

                   tgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLk
                   +       +l L + +   +qR+++YpLLL+ +   t    ++ +r   +
   mFLJ00369   567 CR------RLQLKDMIPTEMQRLTKYPLLLQSIGQNTE---ESTERGKVE 607  

                   kaldllqdlaksiNe<-*
                   +a ++ ++++ ++N+   
   mFLJ00369   608 LAAECCREILHHVNQ    622  

PH: domain 1 of 1, from 666 to 778: score 17.6, E = 0.3
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk............
                      +++eG L+ +  k +  ++++ L +d Ll+ +  +++   ++++++ 
   mFLJ00369   666    LVHEGPLTWRVTKDKAIEVHVLLLDDLLLLLQRQDerlllkshsrtl 712  

                   .......kkpkgsipLsgi.qvekvpdnkrkncFeirt.dr..etlllqa
                   +++++++  ++ ++ L ++ + e ++d  +k   +i t d++ + ++l a
   mFLJ00369   713 tptpdgkTMLRPVLRLTSAmTREVATD--HKAFYVIFTwDQeaQIYELVA 760  

                   eseeerkeWvkaiqsair<-*
                    ++ erk W + i + +    
   mFLJ00369   761 QTSSERKNWCNLITETAG    778  

//