hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj50258/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00368  ( 491 res)   mfj50258

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   GTPase-activator protein for Rho-like GTPase   150.8    1.4e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1     116   302 ..     1   193 []   150.8  1.4e-40

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 116 to 302: score 150.8, E = 1.4e-40
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                       +  + ++++ieyl k  l++eG++Rv+G++ r + Lr+a+++g d 
   mFLJ00368   116    EEGIAQIYQLIEYLHK-NLRVEGLFRVPGNSVRQQLLRDALNNGTDi 161  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   d            +d++e+  +dvA+lLK++L eLPePLlt+++++  ++
   mFLJ00368   162 D------------LDSGEFHSNDVATLLKMFLGELPEPLLTHKHFHVHLK 199  

                   aaklyqieatsr.k.q.s.eksedeeerlralrellslLPpanratLryL
                   +a l          +++ + + +d+e +++al++l+ +LPpanr++L++L
   mFLJ00368   200 IADL------MQfDdKgNkTNIPDKERQIEALQLLFLILPPANRNLLKLL 243  

                   l.HLnrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkv
                   l++L+  a++ ++NkM+a+NLA++F+P  l+p++ + ++    i + n+ 
   mFLJ00368   244 LdLLYQTAKKQDKNKMSAHNLALMFAPHVLWPKnvtandlQENIIKLNTG 293  

                   vetlienad<-*
                   + ++i ++    
   mFLJ00368   294 MAFMIKHSQ    302  

//