hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj50258/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00368  ( 491 res)   mfj50258

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGAP   RhoGAP domain                                  154.9    1.3e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGAP     1/1     122   282 ..     1   155 []   154.9  1.3e-42

Alignments of top-scoring domains:
RhoGAP: domain 1 of 1, from 122 to 282: score 154.9, E = 1.3e-42
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                         ++++ie+l k+ L++EG++Rv+G++ r + Lr+a+++g d dl 
   mFLJ00368   122    ---IYQLIEYLHKN-LRVEGLFRVPGNSVRQQLLRDALNNGTDIDL- 163  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaks.........
                   d +e+  ++vA+lLK+FL eLPePLlt+++++  ++ +a++ + ++++++
   mFLJ00368   164 DSGEFHSNDVATLLKMFLGELPEPLLTHKHFHVHLK-IADLmqfddkgnk 212  

                   ...edeeerlealrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtah
                   ++ +d+e ++eal++l+  LPpaNr++L+ Ll +L++ a+  ++NkM+ah
   mFLJ00368   213 tniPDKERQIEALQLLFLILPPANRNLLKLLLDLLYQTAKKQDKNKMSAH 262  

                   NLAivFgPtLlrppdgdsad<-*
                   NLA+ F+P  l+p++ + +d   
   mFLJ00368   263 NLALMFAPHVLWPKNVTAND    282  

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