hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mni/mni15278/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00367  ( 261 res)   mni15278

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAR      BAR domain                                      53.3    5.4e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAR        1/1      19   233 ..     1   264 []    53.3  5.4e-12

Alignments of top-scoring domains:
BAR: domain 1 of 1, from 19 to 233: score 53.3, E = 5.4e-12
                   *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv
                       kKq                  ++kT   + dFe++  +++ +e+ +
   mFLJ00367    19    PKKQ-----------------IVSKTV--ERDFEREYGKLQQLEEQT 46   

                   kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm
                   k+l+k++k+  ++  a+  + +                       +++++
   mFLJ00367    47 KRLQKDMKKSTDADLAMSKSAV----------------------KISQDL 74   

                   qe..igeelgddsedPfGkaLekygeamkqlaqlleqldervkqnfldPl
                   + ++++e++ d  +     +   +  amk+++ +  +   +++ ++++Pl
   mFLJ00367    75 LSnpLCEQDQDFLH-----MVTALDTAMKRMDAFNQEKVNQIQKTVIEPL 119  

                   tnllekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekkla
                    ++  ++f+ ++ ++k +e  + Dy +  ++++k   +k+k+    + la
   mFLJ00367   120 KKFS-SIFPSLNMAVKRREQALQDYGRLQAKVEKYE-EKEKT---GPVLA 164  

                   kAdqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaql
                   k  q+ eElr  ++ fE+ n +L++e+p ++ ++ ++++++++++++aq 
   mFLJ00367   165 KLHQAREELRPVREDFEAKNKQLLDEMPRFYGSRLDYFQPSFESLIRAQV 214  

                   dfhrqsaqlleqlqqqLdk<-*
                    ++ +++++  +l qqLd+   
   mFLJ00367   215 IYYSEMHKIFGDLTQQLDQ    233  

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