hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mie/mie37001/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00366  ( 264 res)   mie37001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Tryp_SPc Trypsin-like serine protease                   322.2    3.5e-92   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Tryp_SPc   1/1      33   257 ..     1   226 []   322.2  3.5e-92

Alignments of top-scoring domains:
Tryp_SPc: domain 1 of 1, from 33 to 257: score 322.2, E = 3.5e-92
                   *->RIVGGseakigsfPWqvsLq.......CGGSLIsprwVLTAAHC...
                      RIV+G+ a++gs+PWqvsLq++++ + CGGSLIsp+wV+TAAHC+ +
   mFLJ00366    33    RIVNGENAVPGSWPWQVSLQdntgfhfCGGSLISPNWVVTAAHCqvt 79   

                   ....rVrlGshdlssgeeteggprldspggqvikVskiievHpnYn....
                   ++++ V+lG++d+ss+          ++ +qv+++++ i  Hpn+n ++ 
   mFLJ00366    80 pgrhFVVLGEYDRSSN----------AEPVQVLSIARAI-THPNWNantm 118  

                   .NDIALLkLkepvtlsdsntvrPicLPssneiktsegntvpaGttctVsG
                   +ND+ LLkL++p+ +++   v P+cL+s+       ++ +p G tc+ +G
   mFLJ00366   119 nNDLTLLKLASPARYTA--QVSPVCLAST-------NEALPSGLTCVTTG 159  

                   WGrtsegpeesgggslpdvLqevnvpivsnetCr..........MlCAGy
                   WGr+s      +g  +p  Lq+v +p+v+ ++Cr++ + + ++ M+CAG+
   mFLJ00366   160 WGRISG-----VGNVTPARLQQVVLPLVTVNQCRqywgaritdaMICAGG 204  

                   leggntpgGkDaCqGDSGGPLvc......vLvGiVSWGssslygCarpnk
                   +       G+++CqGDSGGPLvc++++++vL+GiVSWG+    +C     
   mFLJ00366   205 S-------GASSCQGDSGGPLVCqkgntwVLIGIVSWGTK---NCN-IQA 243  

                   PGVYTrVssyldWI<-*
                   P+ YTrVs++ +WI   
   mFLJ00366   244 PAMYTRVSKFSTWI    257  

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