hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mie/mie37001/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00366  ( 264 res)   mie37001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Trypsin  Trypsin                                        319.1    5.3e-92   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Trypsin    1/1      34   257 ..     1   258 []   319.1  5.3e-92

Alignments of top-scoring domains:
Trypsin: domain 1 of 1, from 34 to 257: score 319.1, E = 5.3e-92
                   *->IvGGeeaqpgsftsPwqvslqvrsgggsfkhfCGGsLisenwVLTAA
                      Iv+Ge+a pgs+  Pwqvslq ++g    +hfCGGsLis+nwV+TAA
   mFLJ00366    34    IVNGENAVPGSW--PWQVSLQDNTG----FHFCGGSLISPNWVVTAA 74   

                   HCvsgsesapassvqVslslrlGahnlslseggeqkfdvakyiivHpnyn
                   HC       p++ + V     lG++++s++   +q++++a+ +i Hpn+n
   mFLJ00366    75 HCQVT----PGRHFVV-----LGEYDRSSNAEPVQVLSIAR-AITHPNWN 114  

                   pdtldgeYdnDiALlkLsspgvtlsdtvrpicLpattasddlpvGttctv
                   ++t++    nD+ LlkL+sp ++++  v+p+cL++  ++  lp G tc+ 
   mFLJ00366   115 ANTMN----NDLTLLKLASP-ARYTAQVSPVCLAS--TNEALPSGLTCVT 157  

                   sGWGrrptk.ng..lpdvLqevnvpvvsretCrsaylyggkdDKIefvtd
                   +GWGr   ++ g+ +p  Lq+v++p+v+ ++Cr++  +g++      +td
   mFLJ00366   158 TGWGR--ISgVGnvTPARLQQVVLPLVTVNQCRQY--WGAR------ITD 197  

                   nmlCagalggkdaCqGDSGGPLvcsgggrgrwelvGivSwGsygCargnk
                    m+Cag+  g+++CqGDSGGPLvc +g  ++w l+GivSwG ++C+    
   mFLJ00366   198 AMICAGG-SGASSCQGDSGGPLVCQKG--NTWVLIGIVSWGTKNCNIQ-A 243  

                   PGvytrVssyldWI<-*
                   P+ ytrVs++  WI   
   mFLJ00366   244 PAMYTRVSKFSTWI    257  

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