hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msp/msp04321/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00359  ( 1108 res)   msp04321

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_RI   Leucine rich repeat, ribonuclease inhibitor     37.6    1.7e-06   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_RI     1/8     432   459 ..     1    28 []     3.7       80
LRR_RI     2/8     460   487 ..     1    28 []     2.6  1.1e+02
LRR_RI     3/8     560   586 ..     1    28 []     0.2  2.6e+02
LRR_RI     4/8     587   614 ..     1    28 []    20.9     0.18
LRR_RI     5/8     722   749 ..     1    28 []    14.7      2.3
LRR_RI     6/8     750   777 ..     1    28 []     5.0       53
LRR_RI     7/8     956   983 ..     1    28 []     6.6       32
LRR_RI     8/8     989  1011 ..     1    28 []     9.0       14

Alignments of top-scoring domains:
LRR_RI: domain 1 of 8, from 432 to 459: score 3.7, E = 80
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      + sL++L L +  +++ G+ +L ++L     
   mFLJ00359   432    MGSLKTLGLTGSRITAQGISHLIQTLPL    459  

LRR_RI: domain 2 of 8, from 460 to 487: score 2.6, E = 1.1e+02
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       + L+e +L +N l d  +  L e+L s   
   mFLJ00359   460    CSQLEEVSLHDNQLKDPEVLSLVELLPS    487  

LRR_RI: domain 3 of 8, from 560 to 586: score 0.2, E = 2.6e+02
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      ++sL+ L+L+ + l +  a aL e+ +    
   mFLJ00359   560    SRSLQ-LRLQKCQLRIRDAEALVELFQK    586  

LRR_RI: domain 4 of 8, from 587 to 614: score 20.9, E = 0.18
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +p L+e +Ls+N+l d+G+r  aea ++   
   mFLJ00359   587    SPQLEEVNLSGNHLEDDGCRLVAEATSQ    614  

LRR_RI: domain 5 of 8, from 722 to 749: score 14.7, E = 2.3
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +++L  LdLs+N lg +G++ L e+L     
   mFLJ00359   722    THNLDHLDLSDNSLGGKGVILLTELLPG    749  

LRR_RI: domain 6 of 8, from 750 to 777: score 5.0, E = 53
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +  L+ L+Ls N+l  + +  L ++L+s   
   mFLJ00359   750    LGPLKSLNLSRNGLSMDAVFSLVQCLSS    777  

LRR_RI: domain 7 of 8, from 956 to 983: score 6.6, E = 32
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                         L  LdL +N lgd G r L e+L +   
   mFLJ00359   956    CNALSQLDLTDNLLGDIGLRCLLECLPQ    983  

LRR_RI: domain 8 of 8, from 989 to 1011: score 9.0, E = 14
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                           +LdLs+N++  eG+  L e+L s   
   mFLJ00359   989    -----WLDLSHNNISQEGILYLLETLPS    1011 

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