hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mth/mth00001/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00348  ( 1089 res)   mth00001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_RI   Leucine rich repeat, ribonuclease inhibitor    266.6      2e-75  14

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_RI     1/14    689   716 ..     1    28 []    23.2    0.035
LRR_RI     2/14    717   744 ..     1    28 []    30.3  0.00026
LRR_RI     3/14    745   772 ..     1    28 []    17.3     0.95
LRR_RI     4/14    773   800 ..     1    28 []    20.4     0.25
LRR_RI     5/14    801   828 ..     1    28 []    30.4  0.00025
LRR_RI     6/14    829   856 ..     1    28 []    12.9        4
LRR_RI     7/14    857   884 ..     1    28 []    21.9     0.09
LRR_RI     8/14    885   912 ..     1    28 []    13.1      3.8
LRR_RI     9/14    913   940 ..     1    28 []    15.1        2
LRR_RI    10/14    941   968 ..     1    28 []    29.2  0.00057
LRR_RI    11/14    969   996 ..     1    28 []    12.2      5.1
LRR_RI    12/14    997  1024 ..     1    28 []    36.2  4.4e-06
LRR_RI    13/14   1025  1052 ..     1    28 []    26.0   0.0054
LRR_RI    14/14   1053  1080 ..     1    28 []    21.4     0.13

Alignments of top-scoring domains:
LRR_RI: domain 1 of 14, from 689 to 716: score 23.2, E = 0.035
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       +++r+++L+ N +g +Ga+aLa +L     
   mFLJ00348   689    DCRIRKISLAENQIGNKGAKALARSLLV    716  

LRR_RI: domain 2 of 14, from 717 to 744: score 30.3, E = 0.00026
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+sL +LdL++N +g+ Ga+aLa aLk    
   mFLJ00348   717    NRSLITLDLRSNSIGPPGAKALADALKI    744  

LRR_RI: domain 3 of 14, from 745 to 772: score 17.3, E = 0.95
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n++L  L+L++N + d+G++  aeaL s   
   mFLJ00348   745    NRTLTSLSLQSNVIKDDGVMCVAEALVS    772  

LRR_RI: domain 4 of 14, from 773 to 800: score 20.4, E = 0.25
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+++  L+L+ N +g  Ga+++a aLk+   
   mFLJ00348   773    NQTISMLQLQKNLIGLIGAQQMADALKQ    800  

LRR_RI: domain 5 of 14, from 801 to 828: score 30.4, E = 0.00025
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+sL+ L  s+N++gd Ga+aLaeaLk    
   mFLJ00348   801    NRSLKALMFSSNTIGDRGAIALAEALKV    828  

LRR_RI: domain 6 of 14, from 829 to 856: score 12.9, E = 4
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+ L+ LdL++N + d G+ +L  aL s   
   mFLJ00348   829    NQILENLDLQSNSISDMGVTVLMRALCS    856  

LRR_RI: domain 7 of 14, from 857 to 884: score 21.9, E = 0.09
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n++L  L+L+ N + +eGa+aL +aL     
   mFLJ00348   857    NQTLSSLNLRENSISPEGAQALTQALCR    884  

LRR_RI: domain 8 of 14, from 885 to 912: score 13.1, E = 3.8
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n +L+ LdL  N l+d Ga+a+a a  +   
   mFLJ00348   885    NNTLKHLDLTANLLHDRGAQAIAVAVGE    912  

LRR_RI: domain 9 of 14, from 913 to 940: score 15.1, E = 2
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+sL  L+L+ N + +  araL +aL+    
   mFLJ00348   913    NHSLTHLHLQWNFIQAGAARALGQALQL    940  

LRR_RI: domain 10 of 14, from 941 to 968: score 29.2, E = 0.00057
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n++L +LdL+ N +gdeGa   a aLk    
   mFLJ00348   941    NRTLTTLDLQENAIGDEGASSVAGALKV    968  

	[output cut off at A = 10 top alignments]
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