hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mth/mth00001/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00348 ( 1089 res) mth00001 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- NACHT NACHT domain 184.6 1.6e-51 1 LRR_1 Leucine Rich Repeat 40.3 4.5e-08 12 Tropomodulin Tropomodulin -115.9 0.035 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- NACHT 1/1 163 329 .. 1 210 [] 184.6 1.6e-51 LRR_1 1/12 662 686 .. 1 25 [] 2.4 8e+02 LRR_1 2/12 691 718 .. 1 25 [] 1.6 1.1e+03 LRR_1 3/12 719 743 .. 1 25 [] 7.1 1.3e+02 LRR_1 4/12 747 775 .. 1 25 [] 1.0 1.3e+03 LRR_1 5/12 803 827 .. 1 25 [] 2.9 6.5e+02 LRR_1 6/12 831 852 .. 1 25 [] 0.7 1.5e+03 LRR_1 7/12 859 887 .. 1 25 [] 5.0 2.9e+02 LRR_1 8/12 915 942 .. 1 25 [] 3.7 4.7e+02 LRR_1 9/12 943 970 .. 1 25 [] 6.3 1.8e+02 Tropomodulin 1/1 602 1002 .. 1 363 [] -115.9 0.035 LRR_1 10/12 999 1022 .. 1 25 [] 6.3 1.8e+02 LRR_1 11/12 1027 1051 .. 1 25 [] 5.3 2.7e+02 LRR_1 12/12 1055 1082 .. 1 25 [] 4.1 4.2e+02 Alignments of top-scoring domains: NACHT: domain 1 of 1, from 163 to 329: score 184.6, E = 1.6e-51 *->rtvilqGeAGsGKTtLlqklallWaqgklpqgarfdfvFflscrels r+++ +G+AG+GKTtL+++++++Wa+g++ +g f+ v++l +r+l+ mFLJ00348 163 RVSLTIGVAGVGKTTLVRHFVHCWARGQVGKG--FSRVLPLTFRDLN 207 rsgeaaalLrsLadlLfsqwpepaapvreKlfeskvwavllelperlLkS +++ s + l+ s + + ++ p+r+L mFLJ00348 208 TYEKL-----SADRLIQSIFSSIGEASLV-----------ATAPDRVL-- 239 aldppgqttvlilDGlDElvsdlgqpdgelctdwkepqpvrtLLssLlrk l+lDGlDE++++l+++++ +c+d+k++ v++L+ + +r+ mFLJ00348 240 ----------LVLDGLDECKTPLEFSNTMACSDPKKEIQVDHLITNIIRG 279 kLlpgaslLlTsRPdalrkwllrrgLespakRLLELqearylevrgFsee +L+p+ s+++TsRP+a ++ +++gL++ ++e+rg+ ee mFLJ00348 280 NLFPEISVWITSRPSAAGQ--IPGGLVDR-----------MTEIRGLTEE 316 drkeyvrkyfsde<-* ++k++++++f++e mFLJ00348 317 EIKVCLEQMFPEE 329 LRR_1: domain 1 of 12, from 662 to 686: score 2.4, E = 8e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* ++L+L++ N ++++++ + ++l+ mFLJ00348 662 YCQSLRLDN-N-QFQDPVMELlGsVLS 686 LRR_1: domain 2 of 12, from 691 to 718: score 1.6, E = 1.1e+03 *->nLeeLdLsgCNpslsgs.....lppsl.glp<-* ++++++L N ++ g +++++l+ sl + + mFLJ00348 691 RIRKISLAE-N-QI-GNkgakaLARSLlVNR 718 LRR_1: domain 3 of 12, from 719 to 743: score 7.1, E = 1.3e+02 *->nLeeLdLsgCNpslsgs.....lppslglp<-* +L +LdL++ N s+ g++++++l++ l+ mFLJ00348 719 SLITLDLRS-N-SI-GPpgakaLAD--ALK 743 LRR_1: domain 4 of 12, from 747 to 775: score 1.0, E = 1.3e+03 *->nLeeLdLsgCNpslsgs.....lpps.l.glp<-* +L++L+L++ N + ++++ +++ ++ + mFLJ00348 747 TLTSLSLQS-N-VI-KDdgvmcVAEAlVsNQT 775 LRR_1: domain 5 of 12, from 803 to 827: score 2.9, E = 6.5e+02 *->nLeeLdLsgCNpslsgs...lppsl.glp<-* +L+ L +s+ N + g+ ++++ + l+ mFLJ00348 803 SLKALMFSS-N-TI-GDrgaIAL-AeALK 827 LRR_1: domain 6 of 12, from 831 to 852: score 0.7, E = 1.5e+03 *->nLeeLdLsgCNpslsgslppsl.glp<-* Le+LdL++ N s+s ++ ++ mFLJ00348 831 ILENLDLQS-N-SIS-DMGV-TvLMR 852 LRR_1: domain 7 of 12, from 859 to 887: score 5.0, E = 2.9e+02 *->nLeeLdLsgCNpslsgs.....lpps.l.glp<-* +L +L+L+ N s+s ++++ +l +++ + mFLJ00348 859 TLSSLNLRE-N-SIS-PegaqaLTQAlCrNNT 887 LRR_1: domain 8 of 12, from 915 to 942: score 3.7, E = 4.7e+02 *->nLeeLdLsgCNpslsgs.....lppsl.glp<-* +L++L+L+ N ++ +++ +l l+ + mFLJ00348 915 SLTHLHLQW-N-FIQ-AgaaraLGQALqLNR 942 LRR_1: domain 9 of 12, from 943 to 970: score 6.3, E = 1.8e+02 *->nLeeLdLsgCNpslsgs.....lppsl.glp<-* +L++LdL+ N + g++++++++ l++ + mFLJ00348 943 TLTTLDLQE-N-AI-GDegassVAGALkVNT 970 Tropomodulin: domain 1 of 1, from 602 to 1002: score -115.9, E = 0.035 *->eLeieldelDPdnslLPaglRqrdQTkKepTGPfdReaLLeyLEkqA eL + +e ++ r T T P R aL L mFLJ00348 602 ELACSVEE-----AM-------RSGTLAGMTSPSHRTALAYLLQMSD 636 keekDremsm........................................ + ++ + s+ +++ ++ ++ ++ + ++++ +++ + ++ + mFLJ00348 637 ICSPEADFSLclsqhvlqsllpqllycqslrldnnqfqdpvmellgsvls 686 .........................................DlvPftsGe +++ + ++ + +++ ++++ + ++ +++ + + ++ + G mFLJ00348 687 gkdcrirkislaenqignkgakalarsllvnrslitldlrsNSIGPP-GA 735 KPkeekiirGidrGKvfipdaavdkkkpgediraEEqitldldDtepELE K d K+ + + + ++ + E mFLJ00348 736 K-------ALADALKI---NRTLTSLSLQSNVIKDDGVMC-----VAE-- 768 eALanAtdaGlsrdkdkkreElcDlAaILGm.hnlmnnkqYydalkskek AL++ + + l+ l + m l+ n+ + + s+++ mFLJ00348 769 -ALVSNQTI----SMLQLQKNLIGLIGAQQMaDALKQNRSLKALMFSSNT 813 iknkeGntdmqTtingvvKptkykpvpdEPpNp.TdVEes.LkRvkenDp i + + ++ K ++ d N+ +d + L R + mFLJ00348 814 IGDRGA-----IALAEALKVNQILENLDLQSNSiSDMGVTvLMRALCSNQ 858 eLeEVNLNNiknIpietLkelaeAletNthVkkFSLanTrsnDpvAfalA L +NL I+ e ++l+ Al++N +k + L++ + D A a+A mFLJ00348 859 TLSSLNLRE-NSISPEGAQALTQALCRNNTLKHLDLTANLLHDRGAQAIA 907 emLkanktLrSLNvESNFItgegilalvrALlknqTLtElridNQRqaVL + +n +L+ L + NFI + al +AL+ n TLt l d Q a mFLJ00348 908 VAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLTTL--DLQENA-I 954 GnkVEMEiaklLEeNssLLklGyhFtqqgPRhRvanaltRNnDlvRqkRl G++ +a +L+ N++L+ l ++ ++ g a+al R + mFLJ00348 955 GDEGASSVAGALKVNTTLIALYLQVASIG--SQGAQALGEALTVNRTLEI 1002 <-* mFLJ00348 - - LRR_1: domain 10 of 12, from 999 to 1022: score 6.3, E = 1.8e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* +Le+LdL+g N + g + +l + mFLJ00348 999 TLEILDLRG-N-DV-GAAGAKaLaNAL 1022 LRR_1: domain 11 of 12, from 1027 to 1051: score 5.3, E = 2.7e+02 *->nLeeLdLsgCNpslsgs...lppsl.glp<-* +L+ L+L+ N sl g ++++ + l+ mFLJ00348 1027 SLRRLNLQE-N-SL-GMdgaIFV-AsALS 1051 LRR_1: domain 12 of 12, from 1055 to 1082: score 4.1, E = 4.2e+02 *->nLeeLdLsgCNpslsgs.....lppsl.glp<-* L +++L+g N ++ g++++ +++ ++ mFLJ00348 1055 GLHHINLQG-N-PI-GEsaarmISEAIkTNA 1082 //