hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh20362/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00344  ( 1032 res)   msh20362

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LINK     Link (Hyaluronan-binding)                      112.3    5.7e-29   1
EGF      Epidermal growth factor-like domain.            41.0    1.6e-07   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/7       1    34 [.     1    32 []     2.4  1.5e+02
EGF        2/7      38    76 ..     1    32 []    15.5      7.6
EGF        3/7     439   479 ..     1    32 []    11.2       26
EGF        4/7     489   523 ..     1    32 []    17.8      1.5
EGF        5/7     531   562 ..     1    32 []    12.3       21
EGF        6/7     566   603 ..     1    32 []    13.0       18
EGF        7/7     607   646 ..     1    32 []    16.9      2.9
LINK       1/1     677   771 ..     1   107 []   112.3  5.7e-29

Alignments of top-scoring domains:
EGF: domain 1 of 7, from 1 to 34: score 2.4, E = 1.5e+02
                   *->eCa.pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<-*
                        +++C+ +     ++C+ ++++   C+C  p ytg+++ C    
   mFLJ00344     1    --HgGCDRH-----AECTqtgpnQAVCnCL-PKYTGdgkVCT    34   

EGF: domain 2 of 7, from 38 to 76: score 15.5, E = 7.6
                   *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<-
                       C++++++Cs+      + C +++ +  tC+C+ p ytg++  C   
   mFLJ00344    38    VCLtnngGCSPF-----AFCNhteqdQRTCtCK-PDYTGdgiVCR   76   

                   *
                    
   mFLJ00344     -   -    

EGF: domain 3 of 7, from 439 to 479: score 11.2, E = 26
                   *->eCa........pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe
                      +C+  ++++++pC n      G C +  +++ +C+C+  G+ g+ Ce
   mFLJ00344   439    DCQacpggpdtPCNNR-----GMCYdqykpTGQCqCH-TGFNGtACE 479  

                   <-*
                      
   mFLJ00344     -     -    

EGF: domain 4 of 7, from 489 to 523: score 17.8, E = 1.5
                   *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-*
                      +C++ +Cs++     G+C ++ ++s +C C  +G+tg+ C    
   mFLJ00344   489    DCQpcGCSEH-----GQCDegitgSGQClCE-AGWTGrFCD    523  

EGF: domain 5 of 7, from 531 to 562: score 12.3, E = 21
                   *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg...rCe<-*
                       C + Cs +     +tC +  tC C    y+g++ +C    
   mFLJ00344   531    VCIpACSMH-----ATCMeNNTCvCN-LNYEGdgiTCT    562  

EGF: domain 6 of 7, from 566 to 603: score 13.0, E = 18
                   *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-*
                       C +++++C        ++C  +++  +C+C+  Gy+g++++C    
   mFLJ00344   566    FCKqnngGCAK-----VAKCSqkgtQVSCsCQ-KGYKGdghSCT    603  

EGF: domain 7 of 7, from 607 to 646: score 16.9, E = 2.9
                   *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<
                      +Ca++ +++C+++     +tC+ ++++  +C+C+   y g+++ Ce 
   mFLJ00344   607    PCAngvngGCHEH-----ATCRmtgpgKQKCeCK-SHYVGdgrDCE  646  

                   -*
                     
   mFLJ00344     -    -    

LINK: domain 1 of 1, from 677 to 771: score 112.3, E = 5.7e-29
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                      + gVFhl++  G ykLtF+ A+eaC  + A++At+ QL+ A+k+  +
   mFLJ00344   677    TVGVFHLRSPLGQYKLTFDKAKEACAKEAASIATYNQLSYAQKA-KY 722  

                   dqCdaGWLaDGsVrYPIvtPrprCGgDsdglpGVRtVYlfaNQyGfpdpd
                   + C+aGWL  G+V+YP + +  +C++     +G+++       yG + ++
   mFLJ00344   723 HLCSAGWLESGRVAYPTIYASKKCAN----IVGIVD-------YGTRTNK 761  

                   serYDAYCFr<-*
                   se +D++C+r   
   mFLJ00344   762 SEMWDVFCYR    771  

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