hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msh/msh20362/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00344 ( 1032 res) msh20362 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Fasciclin Fasciclin domain 234.4 1.6e-66 3 Xlink Extracellular link domain 94.1 2.7e-24 1 EGF EGF-like domain 55.1 1.5e-12 7 Laminin_EGF Laminin EGF-like (Domains III and V) 1.7 0.099 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/7 1 33 [. 1 39 [] 2.3 11 EGF 2/7 39 75 .. 1 39 [] 18.0 0.22 Fasciclin 1/3 88 206 .. 1 145 [] 109.4 7e-29 Fasciclin 2/3 232 363 .. 1 145 [] 124.6 1.8e-33 EGF 3/7 443 478 .. 1 39 [] 7.3 3.7 Laminin_EGF 1/1 440 495 .. 1 59 [] 1.7 0.099 EGF 4/7 490 522 .. 1 39 [] 21.2 0.024 EGF 5/7 532 561 .. 1 39 [] 14.6 0.7 EGF 6/7 567 602 .. 1 39 [] 21.8 0.016 EGF 7/7 608 645 .. 1 39 [] 18.1 0.21 Xlink 1/1 678 770 .. 1 104 [] 94.1 2.7e-24 Fasciclin 3/3 813 928 .. 1 145 [] 0.3 0.02 Alignments of top-scoring domains: EGF: domain 1 of 7, from 1 to 33: score 2.3, E = 11 *->CspnngpCsngGtCvdtpg.gytCeCppGdyfllytGkrC<-* +C+ +++C++t+ + C C p + ++Gk C mFLJ00344 1 --HG--GCDRHAECTQTGPnQAVCNCLPK---YTGDGKVC 33 EGF: domain 2 of 7, from 39 to 75: score 18.0, E = 0.22 *->CspnngpCsngGtCvdtpg.gytCeCppGdyfllytGkrC<-* C nng+Cs ++C+ t+++ tC C+p + ++G+ C mFLJ00344 39 CLTNNGGCSPFAFCNHTEQdQRTCTCKPD---YTGDGIVC 75 Fasciclin: domain 1 of 3, from 88 to 206: score 109.4, E = 7e-29 *->gfstfvallkaagLvdtLneangkGpfTvFAPtneAFaklpppgtld + s++ l+ + v++L +g+GpfTvF+P+ + F+ + ++ mFLJ00344 88 STSQYFFQLQ-EHAVQEL---AGPGPFTVFVPSSDSFNSE-SKLKV- 128 aLlkelpenkekLknlLkyHvvpggvyslkdslssadLkngsnvtttlaG ++ ++ ++L+yHvv+++ + l ++ Lk +++tt l+G mFLJ00344 129 ------WDKQGLMSQILRYHVVACQ----Q--LLLENLKVITSATT-LQG 165 s.ltvnvsvngggqidvvvndgvnnArvvqaDieatNGViHvIDkVLlP< ++++++vs ++ v +n +A+v ++Di+ tNGViHvID++L P mFLJ00344 166 EpISISVS--QDT---VLINK---KAKVLSSDIISTNGVIHVIDTLLSP 206 -* mFLJ00344 - - Fasciclin: domain 2 of 3, from 232 to 363: score 124.6, E = 1.8e-33 *->gfstfvallkaagLvdtLneangkGpfTvFAPtneAFaklpppgtld g+++f +l++++gL++++ + +++ p+T+F+Pt++A+++l p++ +d mFLJ00344 232 GYTKFSKLIQDSGLLKVITDPMHT-PVTLFWPTDKALQAL-PQEQQD 276 aLlkelpenkekLknlLkyHvvpggvyslkdslssadLkngsnvtttlaG +L++ +nk+kLk+ Lk+Hv+ ++ ++dL + +++t l+G mFLJ00344 277 FLFN--EDNKDKLKAYLKFHVIRDT----M--ALASDLPRSASWKT-LQG 317 s.ltvnvsvngggqidvvvndgvnnArvvqaDieatNGViHvIDkVLlP< s+l+v+++ +g++++ ++ n+ +++r++q+ + GV ++ID +L+ mFLJ00344 318 SeLSVRCG-TGSDVGELFLNG--QMCRIIQRRLLFDGGVAYGIDCLLMD 363 -* mFLJ00344 - - EGF: domain 3 of 7, from 443 to 478: score 7.3, E = 3.7 *->Cspnn.gpCsngGtCvdtpg.gytCeCppGdyfllytGkrC<-* C+ ++ pC+n+G C d ++ +C+C+ G ++G C mFLJ00344 443 CPGGPdTPCNNRGMCYDQYKpTGQCQCHTG-----FNGTAC 478 Laminin_EGF: domain 1 of 1, from 440 to 495: score 1.7, E = 0.099 *->Cd.CnphGslsddtCdsddelf..geetGqClkCkpnvtGrrCdrCk C+ C++ +++ C+ +++++ + tGqC+ C ++ G+ C+ C+ mFLJ00344 440 CQaCPGGPDTP---CNNRGMCYdqYKPTGQCQ-CHTGFNGTACELCL 482 pGyyglpsgdpgqgC<-* pG +g p ++p+ gC mFLJ00344 483 PGRFG-PDCQPC-GC 495 EGF: domain 4 of 7, from 490 to 522: score 21.2, E = 0.024 *->CspnngpCsngGtCvdtpg.gytCeCppGdyfllytGkrC<-* C+p +Cs +G+C ++ ++ +C C G +tG++C mFLJ00344 490 CQPC--GCSEHGQCDEGITgSGQCLCEAG-----WTGRFC 522 EGF: domain 5 of 7, from 532 to 561: score 14.6, E = 0.7 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C p Cs ++tC++ tC C ++++G++C mFLJ00344 532 CIP---ACSMHATCMENN---TCVCNLN---YEGDGITC 561 EGF: domain 6 of 7, from 567 to 602: score 21.8, E = 0.016 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C +nng+C ++C + + +C C++G + ++G+ C mFLJ00344 567 CKQNNGGCAKVAKCSQKGTQVSCSCQKG---YKGDGHSC 602 EGF: domain 7 of 7, from 608 to 645: score 18.1, E = 0.21 *->Cspnn.gpCsngGtCvdtpg.gytCeCppGdyfllytGkrC<-* C+ +g+C+ ++tC++t+ ++ +CeC+ + + ++G++C mFLJ00344 608 CANGVnGGCHEHATCRMTGPgKQKCECKSH---YVGDGRDC 645 Xlink: domain 1 of 1, from 678 to 770: score 94.1, E = 2.7e-24 *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq +VFh+r+p g YkltF+ A++aC+ + A iAT+ QL A k+ ++ mFLJ00344 678 VGVFHLRSPLGQYKLTFDKAKEACAKEAASIATYNQLSYAQKAKYHL 724 CdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddpss C+AGWL g+V YP + ++ C ++ G+ +y G + ++s+ mFLJ00344 725 CSAGWLESGRVAYPTIYASKKC-ANI---VGIVDY-------GTRTNKSE 763 rYDvYCF<-* +Dv+C+ mFLJ00344 764 MWDVFCY 770 Fasciclin: domain 3 of 3, from 813 to 928: score 0.3, E = 0.02 *->gfstfvallkaagLvdtLneangkGpfTvFAPtneAFaklpppgtld fs a + +++ L +++ + + T+F+P n + p+ + mFLJ00344 813 VFSRSSAQGR--AFLKHLTDLSIS-G-TLFVPQNSGL----PKNK-- 849 aLlkelpenkekLknlLkyHvvpggvyslkdslssadLkngsnvtttlaG +L ++ + L++ v+ +dL+ng++++t l+ mFLJ00344 850 SLSG------RDIEHHLTN--VN-V-------SFYDDLVNGTVLKTRLGS 883 s.ltvnvsvngggqidvvvndgvnnArvvqaDieatNGViHvIDkVL.lP + l + ++ ++ ++v ++ + q Di+a+NGV H+I L+ P mFLJ00344 884 QlLITSSQDQLHQEARFVDGR-----AILQWDIIASNGVLHIISEPLkAP 928 <-* mFLJ00344 - 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